Transcript: Human NM_002073.4

Homo sapiens G protein subunit alpha z (GNAZ), mRNA.

Source:
NCBI, updated 2019-07-06
Taxon:
Homo sapiens (human)
Gene:
GNAZ (2781)
Length:
3170
CDS:
502..1569

Additional Resources:

NCBI RefSeq record:
NM_002073.4
NBCI Gene record:
GNAZ (2781)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_002073.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000036775 CCTGAAACTCTACGAGGATAA pLKO.1 1197 CDS 100% 10.800 15.120 N GNAZ n/a
2 TRCN0000289343 CCTGAAACTCTACGAGGATAA pLKO_005 1197 CDS 100% 10.800 15.120 N GNAZ n/a
3 TRCN0000036778 CCTCAGGATCGACTTCCACAA pLKO.1 771 CDS 100% 4.050 5.670 N GNAZ n/a
4 TRCN0000289341 CCTCAGGATCGACTTCCACAA pLKO_005 771 CDS 100% 4.050 5.670 N GNAZ n/a
5 TRCN0000036774 CAGAACAATCTCAAGTACATT pLKO.1 1537 CDS 100% 5.625 3.938 N GNAZ n/a
6 TRCN0000289344 CAGAACAATCTCAAGTACATT pLKO_005 1537 CDS 100% 5.625 3.938 N GNAZ n/a
7 TRCN0000036776 CATCTGCTTTCCCGAGTACAA pLKO.1 1356 CDS 100% 4.950 3.465 N GNAZ n/a
8 TRCN0000289273 CATCTGCTTTCCCGAGTACAA pLKO_005 1356 CDS 100% 4.950 3.465 N GNAZ n/a
9 TRCN0000036777 GACACCAGTAACATCCAGTTT pLKO.1 1486 CDS 100% 4.950 3.465 N GNAZ n/a
10 TRCN0000289342 GACACCAGTAACATCCAGTTT pLKO_005 1486 CDS 100% 4.950 3.465 N GNAZ n/a
11 TRCN0000098273 CCTCTTTGACTCCATCTGCAA pLKO.1 1248 CDS 100% 2.640 1.848 N Gnaz n/a
12 TRCN0000097640 CGTCAAACAGATGAAGATCAT pLKO.1 648 CDS 100% 4.950 2.475 Y LOC239863 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_002073.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06296 pDONR223 100% 99.9% 100% None 309C>T n/a
2 ccsbBroad304_06296 pLX_304 0% 99.9% 100% V5 309C>T n/a
3 TRCN0000468051 TAGTCTGCGGCAAGACTCCTGACG pLX_317 34.1% 99.9% 100% V5 309C>T n/a
4 ccsbBroadEn_06294 pDONR223 100% 99.9% 99.7% None 404C>A n/a
5 ccsbBroad304_06294 pLX_304 0% 99.9% 99.7% V5 404C>A n/a
6 TRCN0000469414 CAACTTGCTGTCACGTGCAAGCGC pLX_317 44.9% 99.9% 99.7% V5 404C>A n/a
7 ccsbBroadEn_06295 pDONR223 100% 99.8% 99.7% None 193G>T;687C>T n/a
8 ccsbBroad304_06295 pLX_304 0% 99.8% 99.7% V5 193G>T;687C>T n/a
9 TRCN0000478848 GGCTACTGCGGCAAGCCGTCTGGA pLX_317 25.8% 99.8% 99.7% V5 193G>T;687C>T n/a
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