Transcript: Human NM_002242.4

Homo sapiens potassium inwardly rectifying channel subfamily J member 13 (KCNJ13), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-24
Taxon:
Homo sapiens (human)
Gene:
KCNJ13 (3769)
Length:
3609
CDS:
138..1220

Additional Resources:

NCBI RefSeq record:
NM_002242.4
NBCI Gene record:
KCNJ13 (3769)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_002242.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000044551 CGCCTTACTTGCCATACAAAT pLKO.1 542 CDS 100% 13.200 18.480 N KCNJ13 n/a
2 TRCN0000262099 CGCCTTACTTGCCATACAAAT pLKO_005 542 CDS 100% 13.200 18.480 N Kcnj13 n/a
3 TRCN0000435110 CAGAATAAGACTTATCCATTT pLKO_005 1213 CDS 100% 10.800 15.120 N KCNJ13 n/a
4 TRCN0000044549 GCGTTGGATGATGTTGGTCTT pLKO.1 296 CDS 100% 4.050 5.670 N KCNJ13 n/a
5 TRCN0000044548 CCACACTATCTGTGTCAAGTA pLKO.1 422 CDS 100% 4.950 3.960 N KCNJ13 n/a
6 TRCN0000044550 CCTTCTCACTTTGAATTAGTT pLKO.1 921 CDS 100% 5.625 3.938 N KCNJ13 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_002242.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06482 pDONR223 100% 99.7% 99.1% None 524C>T;869C>A;925G>T n/a
2 ccsbBroad304_06482 pLX_304 0% 99.7% 99.1% V5 524C>T;869C>A;925G>T n/a
3 TRCN0000471741 CTCCGCTTACACCTAAGTAACTTA pLX_317 47% 99.7% 99.1% V5 524C>T;869C>A;925G>T n/a
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