Transcript: Human NM_003039.3

Homo sapiens solute carrier family 2 member 5 (SLC2A5), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-07-16
Taxon:
Homo sapiens (human)
Gene:
SLC2A5 (6518)
Length:
4085
CDS:
100..1605

Additional Resources:

NCBI RefSeq record:
NM_003039.3
NBCI Gene record:
SLC2A5 (6518)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_003039.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000043003 GCACTGCTCATGCAACAATTT pLKO.1 226 CDS 100% 13.200 18.480 N SLC2A5 n/a
2 TRCN0000043004 CGCCACATCATTTGAGCTTAT pLKO.1 462 CDS 100% 10.800 15.120 N SLC2A5 n/a
3 TRCN0000043007 CAAGACGTTCATAGAGATCAA pLKO.1 1494 CDS 100% 4.950 6.930 N SLC2A5 n/a
4 TRCN0000043005 CCCGTACAGCTTCATTGTCTT pLKO.1 1413 CDS 100% 4.950 6.930 N SLC2A5 n/a
5 TRCN0000043006 CCTTGCTGTTCAACAACATAT pLKO.1 401 CDS 100% 13.200 9.240 N SLC2A5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_003039.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01543 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_01543 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000473805 ACCCCTTGAGGAGTACAGCTTATG pLX_317 22.9% 100% 100% V5 n/a
4 ccsbBroadEn_01544 pDONR223 100% 45.4% 38% None (many diffs) n/a
5 ccsbBroad304_01544 pLX_304 0% 45.4% 38% V5 (many diffs) n/a
6 TRCN0000469408 GTATGTTGGACATGTTCAGGTGTT pLX_317 48.9% 45.4% 38% V5 (many diffs) n/a
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