Transcript: Human NM_004605.2

Homo sapiens sulfotransferase family 2B member 1 (SULT2B1), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-10
Taxon:
Homo sapiens (human)
Gene:
SULT2B1 (6820)
Length:
1281
CDS:
180..1232

Additional Resources:

NCBI RefSeq record:
NM_004605.2
NBCI Gene record:
SULT2B1 (6820)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_004605.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000035353 GATCGAGATCATCTGCTTAAT pLKO.1 362 CDS 100% 13.200 18.480 N SULT2B1 n/a
2 TRCN0000333184 GATCGAGATCATCTGCTTAAT pLKO_005 362 CDS 100% 13.200 18.480 N SULT2B1 n/a
3 TRCN0000344793 GCTCCTGGTTCGACCACATTA pLKO_005 694 CDS 100% 13.200 18.480 N SULT2B1 n/a
4 TRCN0000035350 CCAGAAGTTGCCAGGTGAATA pLKO.1 206 CDS 100% 13.200 9.240 N SULT2B1 n/a
5 TRCN0000333182 CCAGAAGTTGCCAGGTGAATA pLKO_005 206 CDS 100% 13.200 9.240 N SULT2B1 n/a
6 TRCN0000035349 CCTCTATCATTACTCCAAGAT pLKO.1 599 CDS 100% 4.950 3.465 N SULT2B1 n/a
7 TRCN0000035351 CGACATCTTTATCATCACCTA pLKO.1 317 CDS 100% 2.640 1.848 N SULT2B1 n/a
8 TRCN0000333183 CGACATCTTTATCATCACCTA pLKO_005 317 CDS 100% 2.640 1.848 N SULT2B1 n/a
9 TRCN0000035352 CCTATTTATCACCTACGAGGA pLKO.1 749 CDS 100% 2.160 1.512 N SULT2B1 n/a
10 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 3 5UTR 100% 5.625 2.813 Y KLHL30 n/a
11 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 3 5UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_004605.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_13962 pDONR223 100% 95.2% 90.8% None (many diffs) n/a
2 ccsbBroad304_13962 pLX_304 0% 95.2% 90.8% V5 (not translated due to frame shift) (many diffs) n/a
3 TRCN0000471874 ACTTTCACCTTCACGATGCCTCTT pLX_317 28.1% 95.2% 90.8% V5 (not translated due to prior stop codon) (many diffs) n/a
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