Transcript: Human NM_004794.3

Homo sapiens RAB33A, member RAS oncogene family (RAB33A), mRNA.

Source:
NCBI, updated 2019-08-22
Taxon:
Homo sapiens (human)
Gene:
RAB33A (9363)
Length:
945
CDS:
102..815

Additional Resources:

NCBI RefSeq record:
NM_004794.3
NBCI Gene record:
RAB33A (9363)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_004794.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000047775 CGTGCAGATTCGCATCTTCAA pLKO.1 194 CDS 100% 4.950 6.930 N RAB33A n/a
2 TRCN0000047777 GAGCATTACTACCGCAACGTA pLKO.1 411 CDS 100% 3.000 4.200 N RAB33A n/a
3 TRCN0000379795 GCCGATTGAAGGCCCAGAAAT pLKO_005 700 CDS 100% 13.200 10.560 N RAB33A n/a
4 TRCN0000047773 CCTCCAACTTAGCCCTGAAAT pLKO.1 586 CDS 100% 13.200 9.240 N RAB33A n/a
5 TRCN0000100727 CTCCAACTTAGCCCTGAAATT pLKO.1 587 CDS 100% 13.200 9.240 N Rab33a n/a
6 TRCN0000379903 GCCAGAACGTGGAGTCGATTT pLKO_005 664 CDS 100% 10.800 7.560 N RAB33A n/a
7 TRCN0000381609 GTCACCAAGATGACATCTTTC pLKO_005 456 CDS 100% 10.800 7.560 N RAB33A n/a
8 TRCN0000047774 GCCCACAACATGCTCTTGTTT pLKO.1 615 CDS 100% 5.625 3.938 N RAB33A n/a
9 TRCN0000381654 CCCACAGGAAGCTAACAGTAA pLKO_005 776 CDS 100% 4.950 3.465 N RAB33A n/a
10 TRCN0000047776 GACATCTTTCACCAACCTCAA pLKO.1 467 CDS 100% 4.050 2.835 N RAB33A n/a
11 TRCN0000381676 GGTCAGGAACGTTTCCGCAAA pLKO_005 381 CDS 100% 4.050 2.430 N RAB33A n/a
12 TRCN0000100728 CAGTACGTGCAGATTCGCATT pLKO.1 189 CDS 100% 4.050 5.670 N Rab33a n/a
13 TRCN0000380645 AGTACGTGCAGATTCGCATTT pLKO_005 190 CDS 100% 10.800 7.560 N Rab33a n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_004794.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02149 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_02149 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000470865 GCTAGCCCATGTTGTCTCGCCTAG pLX_317 60.3% 100% 100% V5 n/a
4 TRCN0000489665 TTTTACCGAGTGAGAGTTTGTCTA pLX_317 60% 100% 100% V5 (not translated due to prior stop codon) n/a
Download CSV