Transcript: Human NM_004871.3

Homo sapiens golgi SNAP receptor complex member 1 (GOSR1), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-03
Taxon:
Homo sapiens (human)
Gene:
GOSR1 (9527)
Length:
5993
CDS:
27..779

Additional Resources:

NCBI RefSeq record:
NM_004871.3
NBCI Gene record:
GOSR1 (9527)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_004871.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000379866 ATGGAAGACGCGACAGGTATA pLKO_005 157 CDS 100% 10.800 15.120 N GOSR1 n/a
2 TRCN0000060386 CGATTGAGATTGAACAACTTT pLKO.1 238 CDS 100% 5.625 7.875 N GOSR1 n/a
3 TRCN0000060383 GCGACAGGTATAGTTCTGATA pLKO.1 166 CDS 100% 4.950 6.930 N GOSR1 n/a
4 TRCN0000380057 ACGGGAAAGGGAGAATCTTAT pLKO_005 422 CDS 100% 13.200 9.240 N GOSR1 n/a
5 TRCN0000380138 AGAGGAATGTTGAAGTCAATT pLKO_005 609 CDS 100% 13.200 9.240 N GOSR1 n/a
6 TRCN0000379765 AGCAAACTATGTACAAGTTAC pLKO_005 117 CDS 100% 10.800 7.560 N GOSR1 n/a
7 TRCN0000379791 GAAACTCAGATCGTCTGATAG pLKO_005 538 CDS 100% 10.800 7.560 N GOSR1 n/a
8 TRCN0000381471 GGATCAAGCCAAGACAGAATG pLKO_005 204 CDS 100% 10.800 7.560 N GOSR1 n/a
9 TRCN0000381161 TGATAGTGTTGAAGCCTAATG pLKO_005 1081 3UTR 100% 10.800 7.560 N GOSR1 n/a
10 TRCN0000060385 CGAAACTCAGATCGTCTGATA pLKO.1 537 CDS 100% 4.950 3.465 N GOSR1 n/a
11 TRCN0000381115 GAACACTTTGGCCAATCGTTT pLKO_005 641 CDS 100% 4.950 3.465 N GOSR1 n/a
12 TRCN0000060387 CAAAGCAAACTTTATGGCAAT pLKO.1 401 CDS 100% 4.050 2.835 N GOSR1 n/a
13 TRCN0000060384 GCAGGATTATACACATGAATT pLKO.1 371 CDS 100% 0.000 0.000 N GOSR1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_004871.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14022 pDONR223 100% 59.9% 43.2% None (many diffs) n/a
2 ccsbBroad304_14022 pLX_304 0% 59.9% 43.2% V5 (many diffs) n/a
3 TRCN0000468369 TGGCCCGAAACGGGTGGCTGAATA pLX_317 69.9% 59.9% 43.2% V5 (many diffs) n/a
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