Transcript: Human NM_005872.3

Homo sapiens BCAS2 pre-mRNA processing factor (BCAS2), mRNA.

Source:
NCBI, updated 2019-08-07
Taxon:
Homo sapiens (human)
Gene:
BCAS2 (10286)
Length:
1275
CDS:
25..702

Additional Resources:

NCBI RefSeq record:
NM_005872.3
NBCI Gene record:
BCAS2 (10286)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_005872.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000074952 TCGCAGATACCGACCTACTAA pLKO.1 144 CDS 100% 5.625 7.875 N BCAS2 n/a
2 TRCN0000291040 TCGCAGATACCGACCTACTAA pLKO_005 144 CDS 100% 5.625 7.875 N BCAS2 n/a
3 TRCN0000074950 CCCGGATTATTCTGCCTTTGA pLKO.1 189 CDS 100% 4.950 6.930 N BCAS2 n/a
4 TRCN0000290972 CCCGGATTATTCTGCCTTTGA pLKO_005 189 CDS 100% 4.950 6.930 N BCAS2 n/a
5 TRCN0000074949 CGGACTATTGTTCAGCTAGAA pLKO.1 613 CDS 100% 4.950 6.930 N BCAS2 n/a
6 TRCN0000291039 CGGACTATTGTTCAGCTAGAA pLKO_005 613 CDS 100% 4.950 6.930 N BCAS2 n/a
7 TRCN0000074951 CCTGGAAAGTATACAATGAAA pLKO.1 425 CDS 100% 5.625 3.938 N BCAS2 n/a
8 TRCN0000291042 CCTGGAAAGTATACAATGAAA pLKO_005 425 CDS 100% 5.625 3.938 N BCAS2 n/a
9 TRCN0000123425 CGGATTATTCTGCCTTTGAAA pLKO.1 191 CDS 100% 5.625 3.938 N Bcas2 n/a
10 TRCN0000324258 CGGATTATTCTGCCTTTGAAA pLKO_005 191 CDS 100% 5.625 3.938 N Bcas2 n/a
11 TRCN0000074948 GCTGTGGTAATTCTATTTGTA pLKO.1 840 3UTR 100% 5.625 3.938 N BCAS2 n/a
12 TRCN0000290971 GCTGTGGTAATTCTATTTGTA pLKO_005 840 3UTR 100% 5.625 3.938 N BCAS2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_005872.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02385 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_02385 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000470454 GACTTCTTGCCTGACTATCGTGCC pLX_317 67.3% 100% 100% V5 n/a
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