Transcript: Human NM_005989.4

Homo sapiens aldo-keto reductase family 1 member D1 (AKR1D1), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-22
Taxon:
Homo sapiens (human)
Gene:
AKR1D1 (6718)
Length:
2684
CDS:
61..1041

Additional Resources:

NCBI RefSeq record:
NM_005989.4
NBCI Gene record:
AKR1D1 (6718)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_005989.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000417082 ACATCGGTGAAGGTTGCTATT pLKO_005 175 CDS 100% 10.800 15.120 N AKR1D1 n/a
2 TRCN0000046406 CCGCTTTGTAGAATTGCTCAT pLKO.1 978 CDS 100% 4.050 5.670 N AKR1D1 n/a
3 TRCN0000046404 GCGATCATCCTGAATACCCAT pLKO.1 1004 CDS 100% 2.640 3.696 N AKR1D1 n/a
4 TRCN0000425102 TTAATCTTGAAAGGATCAAAG pLKO_005 884 CDS 100% 10.800 7.560 N AKR1D1 n/a
5 TRCN0000042262 CATCCTGAATACCCATTTCAT pLKO.1 1009 CDS 100% 5.625 3.938 N Akr1d1 n/a
6 TRCN0000046407 CAGCTAGATTATGTGGATCTT pLKO.1 388 CDS 100% 4.950 3.465 N AKR1D1 n/a
7 TRCN0000046403 CCTTTGTTAAAGGATGCACTT pLKO.1 769 CDS 100% 4.050 2.835 N AKR1D1 n/a
8 TRCN0000046405 CCCTAGAGATGAGAATGGCAA pLKO.1 456 CDS 100% 2.640 1.848 N AKR1D1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_005989.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01591 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_01591 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000472023 GACCAATTTACCATTCTGCATGGT pLX_317 45.6% 100% 100% V5 n/a
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