Transcript: Human NM_006788.4

Homo sapiens ralA binding protein 1 (RALBP1), mRNA.

Source:
NCBI, updated 2019-08-27
Taxon:
Homo sapiens (human)
Gene:
RALBP1 (10928)
Length:
4379
CDS:
235..2202

Additional Resources:

NCBI RefSeq record:
NM_006788.4
NBCI Gene record:
RALBP1 (10928)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_006788.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000305689 CAGATAGTGTCAGCTTATTTG pLKO_005 2425 3UTR 100% 13.200 18.480 N Ralbp1 n/a
2 TRCN0000047918 CCAGAGAATTTGCTTACCAAA pLKO.1 1057 CDS 100% 4.950 6.930 N RALBP1 n/a
3 TRCN0000291519 CCAGAGAATTTGCTTACCAAA pLKO_005 1057 CDS 100% 4.950 6.930 N RALBP1 n/a
4 TRCN0000047920 GCACAAGAGATAGCCAGTCTT pLKO.1 1600 CDS 100% 4.950 6.930 N RALBP1 n/a
5 TRCN0000291459 GCACAAGAGATAGCCAGTCTT pLKO_005 1600 CDS 100% 4.950 6.930 N RALBP1 n/a
6 TRCN0000047922 GCCAGTTTGCTGAAGCAGTAT pLKO.1 1024 CDS 100% 4.950 3.960 N RALBP1 n/a
7 TRCN0000047919 CCCTACTAAGTTTCCTGGATT pLKO.1 336 CDS 100% 4.950 3.465 N RALBP1 n/a
8 TRCN0000291463 CCCTACTAAGTTTCCTGGATT pLKO_005 336 CDS 100% 4.950 3.465 N RALBP1 n/a
9 TRCN0000047921 CCTCCTGATGTAGTGTCTGAT pLKO.1 403 CDS 100% 4.950 3.465 N RALBP1 n/a
10 TRCN0000291462 CCTCCTGATGTAGTGTCTGAT pLKO_005 403 CDS 100% 4.950 3.465 N RALBP1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_006788.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02565 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_02565 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000476105 GGGCCTCACCTTAGTTTAGCCCCG pLX_317 18% 100% 100% V5 n/a
Download CSV