Transcript: Mouse NM_007557.3

Mus musculus bone morphogenetic protein 7 (Bmp7), mRNA.

Source:
NCBI, updated 2017-06-26
Taxon:
Mus musculus (mouse)
Gene:
Bmp7 (12162)
Length:
3670
CDS:
253..1545

Additional Resources:

NCBI RefSeq record:
NM_007557.3
NBCI Gene record:
Bmp7 (12162)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_007557.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000065711 CGGGAGATCCTGTCCATCTTA pLKO.1 418 CDS 100% 5.625 4.500 N Bmp7 n/a
2 TRCN0000301562 CGGGAGATCCTGTCCATCTTA pLKO_005 418 CDS 100% 5.625 4.500 N Bmp7 n/a
3 TRCN0000065709 CGACGACAGCTCTAATGTCAT pLKO.1 1476 CDS 100% 4.950 3.960 N Bmp7 n/a
4 TRCN0000301498 CGACGACAGCTCTAATGTCAT pLKO_005 1476 CDS 100% 4.950 3.960 N Bmp7 n/a
5 TRCN0000065708 GCGATTTGACAACGAGACCTT pLKO.1 798 CDS 100% 2.640 2.112 N Bmp7 n/a
6 TRCN0000301495 GCGATTTGACAACGAGACCTT pLKO_005 798 CDS 100% 2.640 2.112 N Bmp7 n/a
7 TRCN0000065710 GCAGCCGAATTCAGGATCTAT pLKO.1 760 CDS 100% 0.000 0.000 N Bmp7 n/a
8 TRCN0000301564 GCAGCCGAATTCAGGATCTAT pLKO_005 760 CDS 100% 0.000 0.000 N Bmp7 n/a
9 TRCN0000065712 CTTCCCTCTGAACTCCTACAT pLKO.1 1341 CDS 100% 4.950 3.465 N Bmp7 n/a
10 TRCN0000301496 CTTCCCTCTGAACTCCTACAT pLKO_005 1341 CDS 100% 4.950 3.465 N Bmp7 n/a
11 TRCN0000058959 CCCTCTGAACTCCTACATGAA pLKO.1 1344 CDS 100% 4.950 2.970 N BMP7 n/a
12 TRCN0000058961 CCGGTTTGATCTTTCCAAGAT pLKO.1 717 CDS 100% 4.950 2.970 N BMP7 n/a
13 TRCN0000166364 CACACACACACACACACACAA pLKO.1 2252 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_007557.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00167 pDONR223 100% 90.7% 97.4% None (many diffs) n/a
2 ccsbBroad304_00167 pLX_304 0% 90.7% 97.4% V5 (many diffs) n/a
3 TRCN0000479677 AAAACCCGAACGCCTTCTGATTGC pLX_317 27.9% 90.7% 97.4% V5 (many diffs) n/a
4 ccsbBroadEn_10697 pDONR223 100% 82.8% 85.9% None (many diffs) n/a
5 ccsbBroad304_10697 pLX_304 0% 82.8% 85.9% V5 (many diffs) n/a
6 TRCN0000471872 TTAACCAAGATTGGCACAATTCTG pLX_317 36.3% 82.8% 85.9% V5 (many diffs) n/a
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