Transcript: Mouse NM_007939.2

Mus musculus Eph receptor A8 (Epha8), mRNA.

Source:
NCBI, updated 2017-05-20
Taxon:
Mus musculus (mouse)
Gene:
Epha8 (13842)
Length:
4732
CDS:
70..3084

Additional Resources:

NCBI RefSeq record:
NM_007939.2
NBCI Gene record:
Epha8 (13842)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_007939.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000361128 GTGTCTACGCCGAGATCAAAT pLKO_005 353 CDS 100% 13.200 18.480 N Epha8 n/a
2 TRCN0000023507 ACTCCGAATCTACTACAAGAA pLKO.1 654 CDS 100% 4.950 6.930 N Epha8 n/a
3 TRCN0000023505 CCGGAGCTTTACCCGAGAGAT pLKO.1 1935 CDS 100% 1.650 2.310 N Epha8 n/a
4 TRCN0000023506 CTTGTTGGATACATCAACCAT pLKO.1 165 CDS 100% 3.000 2.400 N Epha8 n/a
5 TRCN0000361191 ACCTGATCTCCAGCGTAAATG pLKO_005 1067 CDS 100% 13.200 9.240 N Epha8 n/a
6 TRCN0000368714 CAGCCATCATGGGCCAATTTG pLKO_005 2120 CDS 100% 13.200 9.240 N Epha8 n/a
7 TRCN0000361189 GGCCACTTGGCACTGGTTATA pLKO_005 3090 3UTR 100% 13.200 9.240 N Epha8 n/a
8 TRCN0000023508 CCTCTTGCTTCTCATCTGCAA pLKO.1 1737 CDS 100% 2.640 1.848 N Epha8 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_007939.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06170 pDONR223 100% 43.2% 42.2% None (many diffs) n/a
2 ccsbBroad304_06170 pLX_304 0% 43.2% 42.2% V5 (many diffs) n/a
3 TRCN0000470862 CCTTATTTCTCCCTATTGCCCGTC pLX_317 27.7% 43.2% 42.2% V5 (many diffs) n/a
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