Construct: ORF TRCN0000470862

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009315.1_s317c1
Derived from:
ccsbBroadEn_06170
DNA Barcode:
CCTTATTTCTCCCTATTGCCCGTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EPHA8 (2046)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000470862
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2046 EPHA8 EPH receptor A8 NM_001006943.3 99.9% 100% 6C>T
2 human 2046 EPHA8 EPH receptor A8 XR_946576.2 62.7% (many diffs)
3 human 2046 EPHA8 EPH receptor A8 NM_020526.5 47.7% 43.9% (many diffs)
4 human 2046 EPHA8 EPH receptor A8 XM_011540969.1 40.3% 36.6% (many diffs)
5 human 2046 EPHA8 EPH receptor A8 XM_011540970.1 40.3% 36.6% (many diffs)
6 human 2046 EPHA8 EPH receptor A8 XM_011540972.1 40.3% 36.6% (many diffs)
7 human 2046 EPHA8 EPH receptor A8 XM_011540973.1 40.3% 36.6% (many diffs)
8 mouse 13842 Epha8 Eph receptor A8 XM_006538530.3 79.6% 84.8% (many diffs)
9 mouse 13842 Epha8 Eph receptor A8 NM_007939.2 43.2% 42.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1551
ORF length:
1485
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc tcccgcccgg ggccgcctgc cccctgcgct ctgggtcgtc acggccgcgg
121cggcggcggc cacctgcgtg tccgcggcgc gcggcgaagt gaatttgctg gacacgtcga
181ccatccacgg ggactggggc tggctcacgt atccggctca tgggtgggac tccatcaacg
241aggtggacga gtccttccag cccatccaca cgtaccaggt ttgcaacgtc atgagcccca
301accagaacaa ctggctgcgc acgagctggg tcccccgaga cggcgcccgg cgcgtctatg
361ctgagatcaa gtttaccctg cgcgactgca acagcatgcc tggtgtgctg ggcacctgca
421aggagacctt caacctctac tacctggagt cggaccgcga cctgggggcc agcacacaag
481aaagccagtt cctcaaaatc gacaccattg cggccgacga gagcttcaca ggtgccgacc
541ttggtgtgcg gcgtctcaag ctcaacacgg aggtgcgcag tgtgggtccc ctcagcaagc
601gcggcttcta cctggccttc caggacatag gtgcctgcct ggccatcctc tctctccgca
661tctactataa gaagtgccct gccatggtgc gcaatctggc tgccttctcg gaggcagtga
721cgggggccga ctcgtcctca ctggtggagg tgaggggcca gtgcgtgcgg cactcagagg
781agcgggacac acccaagatg tactgcagcg cggagggcga gtggctcgtg cccatcggca
841aatgcgtgtg cagtgccggc tacgaggagc ggcgggatgc ctgtgtggcc tgtgagctgg
901gcttctacaa gtcagcccct ggggaccagc tgtgtgcccg ctgccctccc cacagccact
961ccgcagctcc agccgcccaa gcctgccact gtgacctcag ctactaccgt gcagccctgg
1021acccgccgtc ctcagcctgc acccggccac cctcggcacc agtgaacctg atctccagtg
1081tgaatgggac atcagtgact ctggagtggg cccctcccct ggacccaggt ggccgcagtg
1141acaTCACCTA CAATGCCGTG TGCCGCCGCT GCCCCTGGGC ACTGAGCCGC TGCGAGGCAT
1201GTGGGAGCGG CACCCGCTTT GTGCCCCAGC AGACAAGCCT GGTGCAGGCC AGCCTGCTGG
1261TGGCCAACCT GCTGGCCCAC ATGAACTACT CCTTCTGGAT CGAGGCCGTC AATGGCGTGT
1321CCGACCTGAG CCCCGAGCCC CGCCGGGCCG CTGTGGTCAA CATCACCACG AACCAGGCAG
1381GTAGGCGGAG AAACTCCGTC CCGCAGCGTC CTGGTCCCCC AGCTTCCCCT GCCTCAGACC
1441CATCCAGGGA TCAGAGCTCT GCCGGGGACG TGCTGTGGGC CTTTAGGCAA GTGCCTCTCT
1501GGCCCTGCGC TCCTCACCAG GACCCAGAGC TGGAGGCTCT TCATTGCCTT TACCCAACTT
1561TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
1621CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
1681CTTGTGGAAA GGACGACCTT ATTTCTCCCT ATTGCCCGTC ACGCGTTAAG TCgacaatca
1741acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)