Transcript: Mouse NM_008584.4

Mus musculus mesenchyme homeobox 2 (Meox2), mRNA.

Source:
NCBI, updated 2019-09-26
Taxon:
Mus musculus (mouse)
Gene:
Meox2 (17286)
Length:
2360
CDS:
292..1203

Additional Resources:

NCBI RefSeq record:
NM_008584.4
NBCI Gene record:
Meox2 (17286)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_008584.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000431624 GAAATCACCAAGTGGATATAA pLKO_005 1698 3UTR 100% 15.000 21.000 N Meox2 n/a
2 TRCN0000421959 ACCTTACCGAACATCGTTTAC pLKO_005 1254 3UTR 100% 10.800 15.120 N Meox2 n/a
3 TRCN0000070614 GTCTTGCATAATCGCGGGATA pLKO.1 429 CDS 100% 4.050 5.670 N Meox2 n/a
4 TRCN0000070613 GCAGAATTTGCCCATCATAAT pLKO.1 898 CDS 100% 13.200 10.560 N Meox2 n/a
5 TRCN0000434166 ACACTTATGATACCTACAAAG pLKO_005 1194 CDS 100% 10.800 8.640 N Meox2 n/a
6 TRCN0000070616 CTGACCAGACTGAGAAGATAT pLKO.1 922 CDS 100% 13.200 9.240 N Meox2 n/a
7 TRCN0000070617 CCCAACGAGGAGGGCATGTTT pLKO.1 451 CDS 100% 1.875 1.313 N Meox2 n/a
8 TRCN0000070615 GAAGGAAACTACAAGTCAGAA pLKO.1 814 CDS 100% 4.950 2.970 N Meox2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_008584.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10965 pDONR223 100% 89.5% 98% None (many diffs) n/a
2 ccsbBroad304_10965 pLX_304 0% 89.5% 98% V5 (many diffs) n/a
3 TRCN0000479953 ACCTTGCCGGTCCCAGTAATTCAA pLX_317 44.1% 89.5% 98% V5 (many diffs) n/a
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