Transcript: Mouse NM_009713.4

Mus musculus arylsulfatase A (Arsa), mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Arsa (11883)
Length:
3491
CDS:
1209..2729

Additional Resources:

NCBI RefSeq record:
NM_009713.4
NBCI Gene record:
Arsa (11883)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_009713.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000366519 AGTCATCTTCACTGCAGATAA pLKO_005 2030 CDS 100% 13.200 18.480 N Arsa n/a
2 TRCN0000366586 TGGACTACGGTTCACAGATTT pLKO_005 1370 CDS 100% 13.200 18.480 N Arsa n/a
3 TRCN0000101489 CCGACCGTTCTTCCTGTACTA pLKO.1 1853 CDS 100% 4.950 6.930 N Arsa n/a
4 TRCN0000366583 CCCACTGCTCTACGACTTATC pLKO_005 2480 CDS 100% 10.800 8.640 N Arsa n/a
5 TRCN0000101487 GCTGGAAGAGACACTAGTCAT pLKO.1 2015 CDS 100% 0.000 0.000 N Arsa n/a
6 TRCN0000366520 ATTCCTGGGCATCCCATATTC pLKO_005 1634 CDS 100% 13.200 9.240 N Arsa n/a
7 TRCN0000376920 TGCTGTTCGGAATGGGAAATA pLKO_005 2366 CDS 100% 13.200 9.240 N Arsa n/a
8 TRCN0000376999 CTACTGGCCAGGTCACATTAC pLKO_005 2153 CDS 100% 10.800 7.560 N Arsa n/a
9 TRCN0000376998 GTGTAGTTTGTATCTGGTAAT pLKO_005 2827 3UTR 100% 10.800 7.560 N Arsa n/a
10 TRCN0000101486 CCTAACATCCTGCTGATCTTT pLKO.1 1266 CDS 100% 5.625 3.938 N Arsa n/a
11 TRCN0000101488 CCCACGGAAGTCTGTCTTCTT pLKO.1 2309 CDS 100% 4.950 3.465 N Arsa n/a
12 TRCN0000101485 CCACCTTACCAGAAAGAGCTT pLKO.1 2987 3UTR 100% 2.640 1.848 N Arsa n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_009713.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10421 pDONR223 100% 82.9% 85.2% None (many diffs) n/a
2 ccsbBroad304_10421 pLX_304 0% 82.9% 85.2% V5 (many diffs) n/a
3 TRCN0000472473 TTCTCAGGGTCTATCAGGGAACCA pLX_317 24% 82.9% 85.2% V5 (many diffs) n/a
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