Transcript: Mouse NM_009754.3

Mus musculus BCL2-like 11 (apoptosis facilitator) (Bcl2l11), transcript variant 3, mRNA.

Source:
NCBI, updated 2017-05-20
Taxon:
Mus musculus (mouse)
Gene:
Bcl2l11 (12125)
Length:
4782
CDS:
229..561

Additional Resources:

NCBI RefSeq record:
NM_009754.3
NBCI Gene record:
Bcl2l11 (12125)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_009754.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000231247 GTCCACACGTGTCGCTAAATC pLKO_005 4382 3UTR 100% 13.200 18.480 N Bcl2l11 n/a
2 TRCN0000231244 GACGAGTTCAACGAAACTTAC pLKO_005 433 CDS 100% 10.800 15.120 N Bcl2l11 n/a
3 TRCN0000009694 CCCGGAGATACGGATTGCACA pLKO.1 393 CDS 100% 0.880 1.232 N Bcl2l11 n/a
4 TRCN0000009695 AGCTTCCATACGACAGTCTCA pLKO.1 351 CDS 100% 2.640 3.432 N Bcl2l11 n/a
5 TRCN0000231246 CTTACAACTGTTACGCTTTAT pLKO_005 513 CDS 100% 13.200 9.240 N Bcl2l11 n/a
6 TRCN0000231243 TGACAGAGAAGGTGGACAATT pLKO_005 264 CDS 100% 13.200 9.240 N Bcl2l11 n/a
7 TRCN0000009692 GTGACAGAGAAGGTGGACAAT pLKO.1 263 CDS 100% 4.950 3.465 N Bcl2l11 n/a
8 TRCN0000009693 TCTCAGGAGGAACCTGAAGAT pLKO.1 367 CDS 100% 0.495 0.347 N Bcl2l11 n/a
9 TRCN0000231245 GGCTGAAGACCACCCTCAAAT pLKO_005 486 CDS 100% 13.200 7.920 N Bcl2l11 n/a
10 TRCN0000166364 CACACACACACACACACACAA pLKO.1 2578 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_009754.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02292 pDONR223 100% 47.9% 45% None (many diffs) n/a
2 ccsbBroad304_02292 pLX_304 88.4% 47.9% 45% V5 (many diffs) n/a
3 TRCN0000469407 GTCTAGTATATTAGGCACTTGCCG pLX_317 65.9% 47.9% 45% V5 (many diffs) n/a
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