Construct: ORF ccsbBroadEn_02292

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004833.1_s300c1, BRDN0000390666
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
BCL2L11 (10018)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10018 BCL2L11 BCL2 like 11 NM_138621.5 100% 100%
2 human 10018 BCL2L11 BCL2 like 11 NM_001204108.1 86% 84.3% (many diffs)
3 human 10018 BCL2L11 BCL2 like 11 XM_005263556.3 86% 80.3% (many diffs)
4 human 10018 BCL2L11 BCL2 like 11 XM_005263557.4 86% 80.3% (many diffs)
5 human 10018 BCL2L11 BCL2 like 11 NM_138622.3 84.8% 83.8% (many diffs)
6 human 10018 BCL2L11 BCL2 like 11 NM_006538.5 69.6% 69.6% 122_123ins180
7 human 10018 BCL2L11 BCL2 like 11 NM_001204109.1 69% 67.1% (many diffs)
8 human 10018 BCL2L11 BCL2 like 11 XM_005263551.3 67.8% 67.8% 1_282del
9 human 10018 BCL2L11 BCL2 like 11 NM_138624.3 67.5% 66.6% (many diffs)
10 human 10018 BCL2L11 BCL2 like 11 NM_138626.3 66.8% 66.1% 395_399delGTATTinsC;401_402insCCATGAGGCAGGC;405_406ins180
11 human 10018 BCL2L11 BCL2 like 11 XM_005263550.4 59.8% 55.8% (many diffs)
12 human 10018 BCL2L11 BCL2 like 11 XM_005263561.3 58% 52.3% (many diffs)
13 human 10018 BCL2L11 BCL2 like 11 XR_922828.3 54.9% 1_342del;839_970del;1061_1062insAATGCAT
14 human 10018 BCL2L11 BCL2 like 11 NM_001204106.2 54.5% 54.5% 123_124ins270
15 human 10018 BCL2L11 BCL2 like 11 NM_138623.3 54.5% 53.5% (many diffs)
16 human 10018 BCL2L11 BCL2 like 11 XM_011510461.3 52% 42.3% (many diffs)
17 human 10018 BCL2L11 BCL2 like 11 XR_922829.3 49.2% 1_342del;839_1095del;1186_1187insAATGCAT
18 human 10018 BCL2L11 BCL2 like 11 XR_001738579.2 48.4% (many diffs)
19 human 10018 BCL2L11 BCL2 like 11 XM_005263553.3 47.2% 47.2% 1_282del;404_405ins180
20 human 10018 BCL2L11 BCL2 like 11 NM_207002.3 46.5% 33.4% (many diffs)
21 human 10018 BCL2L11 BCL2 like 11 XM_005263554.3 45.4% 44.8% (many diffs)
22 human 10018 BCL2L11 BCL2 like 11 NM_001204113.1 45.3% 37.7% (many diffs)
23 human 10018 BCL2L11 BCL2 like 11 XM_017003102.1 44% 38.3% (many diffs)
24 human 10018 BCL2L11 BCL2 like 11 NM_001204107.1 41.4% 39.3% (many diffs)
25 human 10018 BCL2L11 BCL2 like 11 NM_001204110.2 40.5% 38.8% (many diffs)
26 human 10018 BCL2L11 BCL2 like 11 XM_005263552.4 40.3% 36.3% (many diffs)
27 human 10018 BCL2L11 BCL2 like 11 NM_207003.3 39.3% 38.3% (many diffs)
28 human 10018 BCL2L11 BCL2 like 11 NM_001204112.2 38.8% 36.8% (many diffs)
29 human 10018 BCL2L11 BCL2 like 11 XM_005263559.3 36.9% 36.9% 1_282del;405_406ins270
30 human 10018 BCL2L11 BCL2 like 11 NM_001204111.2 36.7% 35.8% (many diffs)
31 human 10018 BCL2L11 BCL2 like 11 XM_011510464.3 31.9% 23.6% (many diffs)
32 human 10018 BCL2L11 BCL2 like 11 NM_138625.4 31.1% 27.2% (many diffs)
33 human 10018 BCL2L11 BCL2 like 11 XM_017003101.2 25% 24.3% (many diffs)
34 human 10018 BCL2L11 BCL2 like 11 NM_138627.4 22.2% 21.7% 128T>A;130_131delTTinsCC;135_136ins459
35 human 10018 BCL2L11 BCL2 like 11 XR_244801.3 11.2% 1_342del;840_964del;1062_5277del
36 human 10018 BCL2L11 BCL2 like 11 XR_001738580.2 7.8% (many diffs)
37 human 10018 BCL2L11 BCL2 like 11 XR_002958776.1 7.8% (many diffs)
38 mouse 12125 Bcl2l11 BCL2-like 11 (apoptosis fac... NM_207680.2 86.7% 86.5% (many diffs)
39 mouse 12125 Bcl2l11 BCL2-like 11 (apoptosis fac... XM_006498614.3 63.3% 63.1% (many diffs)
40 mouse 12125 Bcl2l11 BCL2-like 11 (apoptosis fac... NM_207681.2 60.5% 60% (many diffs)
41 mouse 12125 Bcl2l11 BCL2-like 11 (apoptosis fac... XM_006498615.3 50.1% 47.4% (many diffs)
42 mouse 12125 Bcl2l11 BCL2-like 11 (apoptosis fac... NM_009754.3 47.9% 45% (many diffs)
43 mouse 12125 Bcl2l11 BCL2-like 11 (apoptosis fac... XM_006498616.3 44.2% 43.7% (many diffs)
44 mouse 12125 Bcl2l11 BCL2-like 11 (apoptosis fac... NM_001291016.1 42.3% 38.3% (many diffs)
45 mouse 12125 Bcl2l11 BCL2-like 11 (apoptosis fac... XM_006498617.3 34.9% 32.8% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
660
ORF length:
594
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC AAAGCAACCT TCTGATGTAA GTTCTGAGTG TGACCGAGAA GGTAGACAAT
121TGCAGCCTGC GGAGAGGCCT CCCCAGCTCA GACCTGGGGC CCCTACCTCC CTACAGACAG
181AGCCACAAGG TAATCCTGAA GGCAATCACG GAGGTGAAGG GGACAGCTGC CCCCACGGCA
241GCCCTCAGGG CCCGCTGGCC CCACCTGCCA GCCCTGGCCC TTTTGCTACC AGATCCCCGC
301TTTTCATCTT TATGAGAAGA TCCTCCCTGC TGTCTCGATC CTCCAGTGGG TATTTCTCTT
361TTGACACAGA CAGGAGCCCA GCACCCATGA GTTGTGACAA ATCAACACAA ACCCCAAGTC
421CTCCTTGCCA GGCCTTCAAC CACTATCTCA GTGCAATGGC TTCCATGAGG CAGGCTGAAC
481CTGCAGATAT GCGCCCAGAG ATATGGATCG CCCAAGAGTT GCGGCGTATT GGAGACGAGT
541TTAACGCTTA CTATGCAAGG AGGGTATTTT TGAATAATTA CCAAGCAGCC GAAGACCACC
601CACGAATGGT TATCTTACGA CTGTTACGTT ACATTGTCCG CCTGGTGTGG AGAATGCATT
661GCCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca
721acgaac

Download FASTA (ORF) (Full)