Transcript: Mouse NM_010380.3

Mus musculus histocompatibility 2, D region locus 1 (H2-D1), mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
H2-D1 (14964)
Length:
1736
CDS:
21..1109

Additional Resources:

NCBI RefSeq record:
NM_010380.3
NBCI Gene record:
H2-D1 (14964)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_010380.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000374451 AGTGGTGCTGCAGAGCATTAC pLKO_005 540 CDS 100% 10.800 7.560 N H2-D1 n/a
2 TRCN0000366103 ACACACTCCAGCAGATGTCTG pLKO_005 370 CDS 100% 4.050 2.835 N H2-D1 n/a
3 TRCN0000200926 CCCTCAGTTCTCTTTACACAA pLKO.1 1176 3UTR 100% 4.950 2.970 N H2-D1 n/a
4 TRCN0000066948 CAGAGCCCTCAGTTCTCTTTA pLKO.1 1171 3UTR 100% 13.200 6.600 Y H2-Q7 n/a
5 TRCN0000201143 CCAAAGGTCCTGAGTTCAAAT pLKO.1 1455 3UTR 100% 13.200 6.600 Y Ptcra n/a
6 TRCN0000374452 CCACACTCGATGCGGTATTTC pLKO_005 96 CDS 100% 13.200 6.600 Y H2-D1 n/a
7 TRCN0000271917 CCCACACTCGATGCGGTATTT pLKO_005 95 CDS 100% 13.200 6.600 Y Gm8909 n/a
8 TRCN0000374453 GACGCGGAGAATCCGAGATAT pLKO_005 207 CDS 100% 13.200 6.600 Y H2-D1 n/a
9 TRCN0000366105 TGAAATGTCTCTCCGAGATTG pLKO_005 1079 CDS 100% 10.800 5.400 Y H2-D1 n/a
10 TRCN0000366104 GGTACATCTCTGTCGGCTATG pLKO_005 154 CDS 100% 6.000 3.000 Y H2-D1 n/a
11 TRCN0000066566 GCCCTGAACGAAGACCTGAAA pLKO.1 465 CDS 100% 4.950 2.475 Y H2-Q8 n/a
12 TRCN0000376690 TCTGGGTGTCCTTGGAGCTAT pLKO_005 959 CDS 100% 4.950 2.475 Y H2-D1 n/a
13 TRCN0000114042 CACTGACTCTTACATGGTGAT pLKO.1 929 CDS 100% 4.050 2.025 Y H2-K1 n/a
14 TRCN0000201198 GACTCTTACATGGTGATCGTT pLKO.1 933 CDS 100% 3.000 1.500 Y H2-D1 n/a
15 TRCN0000120127 CCTGAGTTCAAATCCCAGCAA pLKO.1 1463 3UTR 100% 2.640 1.320 Y Adsl n/a
16 TRCN0000339691 CCTGAGTTCAAATCCCAGCAA pLKO_005 1463 3UTR 100% 2.640 1.320 Y Adsl n/a
17 TRCN0000066805 CAGATACCTGAAGAACGGGAA pLKO.1 599 CDS 100% 2.160 1.080 Y H2-K1 n/a
18 TRCN0000318013 CAGATACCTGAAGAACGGGAA pLKO_005 599 CDS 100% 2.160 1.080 Y H2-K1 n/a
19 TRCN0000066563 CCGCGATTACATCGCCCTGAA pLKO.1 452 CDS 100% 1.350 0.675 Y H2-Q8 n/a
20 TRCN0000114044 TGACTCTTACATGGTGATCAT pLKO.1 932 CDS 100% 4.950 2.475 Y H2-K1 n/a
21 TRCN0000066903 GAGCAGAATTACACATGCCAT pLKO.1 852 CDS 100% 2.640 1.320 Y H2-Q6 n/a
22 TRCN0000192133 GAGCAGAATTACACATGCCAT pLKO.1 852 CDS 100% 2.640 1.320 Y H2-D1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_010380.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.