Transcript: Mouse NM_011591.5

Mus musculus translocase of inner mitochondrial membrane 17b (Timm17b), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-06-10
Taxon:
Mus musculus (mouse)
Gene:
Timm17b (21855)
Length:
1703
CDS:
109..627

Additional Resources:

NCBI RefSeq record:
NM_011591.5
NBCI Gene record:
Timm17b (21855)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_011591.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000348207 AGCTTCATACGTGTAACAATT pLKO_005 835 3UTR 100% 13.200 18.480 N Timm17b n/a
2 TRCN0000114229 CCGGTTCAGAGGTAGTGTCAA pLKO.1 246 CDS 100% 4.950 3.960 N Timm17b n/a
3 TRCN0000334078 CCGGTTCAGAGGTAGTGTCAA pLKO_005 246 CDS 100% 4.950 3.960 N Timm17b n/a
4 TRCN0000348136 GCATCCTTCTCACCCGCTATA pLKO_005 497 CDS 100% 10.800 7.560 N Timm17b n/a
5 TRCN0000114227 CCATGGCGAATTGTGGATGAT pLKO.1 136 CDS 100% 4.950 3.465 N Timm17b n/a
6 TRCN0000180133 CCATGGCGAATTGTGGATGAT pLKO.1 136 CDS 100% 4.950 3.465 N TIMM17B n/a
7 TRCN0000114230 GCTTTCACCATGGGTGTCATT pLKO.1 166 CDS 100% 4.950 3.465 N Timm17b n/a
8 TRCN0000334077 GCTTTCACCATGGGTGTCATT pLKO_005 166 CDS 100% 4.950 3.465 N Timm17b n/a
9 TRCN0000114228 CCGCTATACTGCCCAGCAGTT pLKO.1 510 CDS 100% 1.350 0.945 N Timm17b n/a
10 TRCN0000021429 CACACCTGTAATCCCAGCATT pLKO.1 1101 3UTR 100% 4.950 2.475 Y ERN2 n/a
11 TRCN0000138998 CACACCTGTAATCCCAGCATT pLKO.1 1101 3UTR 100% 4.950 2.475 Y P3H4 n/a
12 TRCN0000344020 CACACCTGTAATCCCAGCATT pLKO_005 1101 3UTR 100% 4.950 2.475 Y P3H4 n/a
13 TRCN0000007228 CACCTGTAATCCCAGCACTTT pLKO.1 1103 3UTR 100% 4.950 2.475 Y CFLAR n/a
14 TRCN0000166635 CACCTGTAATCCCAGCACTTT pLKO.1 1103 3UTR 100% 4.950 2.475 Y C19orf31 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_011591.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02368 pDONR223 100% 89.3% 95.9% None (many diffs) n/a
2 ccsbBroad304_02368 pLX_304 0% 89.3% 95.9% V5 (many diffs) n/a
3 TRCN0000480476 TTACTCAGGGATTCTGAGAATTTC pLX_317 81.9% 89.3% 95.9% V5 (many diffs) n/a
Download CSV