Transcript: Mouse NM_011817.2

Mus musculus growth arrest and DNA-damage-inducible 45 gamma (Gadd45g), mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Gadd45g (23882)
Length:
1081
CDS:
106..585

Additional Resources:

NCBI RefSeq record:
NM_011817.2
NBCI Gene record:
Gadd45g (23882)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_011817.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000234425 ATAGCGCTGCAGATCCATTTC pLKO_005 319 CDS 100% 10.800 15.120 N Gadd45g n/a
2 TRCN0000234427 ATCCTCATTTCGAATCCTAAT pLKO_005 463 CDS 100% 10.800 15.120 N Gadd45g n/a
3 TRCN0000088244 CGAATCCTAATGAGGACACAT pLKO.1 473 CDS 100% 4.950 3.960 N Gadd45g n/a
4 TRCN0000234424 TGAATGTGGACCCTGACAATG pLKO_005 254 CDS 100% 10.800 7.560 N Gadd45g n/a
5 TRCN0000088247 CAGATCCATTTCACGTTGATT pLKO.1 328 CDS 100% 5.625 3.938 N Gadd45g n/a
6 TRCN0000088245 GCTGTGAGAACGACATTGATA pLKO.1 359 CDS 100% 5.625 3.938 N Gadd45g n/a
7 TRCN0000088246 CATCCTCATTTCGAATCCTAA pLKO.1 462 CDS 100% 4.950 3.465 N Gadd45g n/a
8 TRCN0000234428 CAAGCAGCCTTCCAGTGAAAG pLKO_005 876 3UTR 100% 10.800 6.480 N Gadd45g n/a
9 TRCN0000234426 TCTGCTGTGAGAACGACATTG pLKO_005 356 CDS 100% 10.800 6.480 N Gadd45g n/a
10 TRCN0000088243 GATCGACTTGGTGACACTCTA pLKO.1 609 3UTR 100% 4.950 2.970 N Gadd45g n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_011817.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02557 pDONR223 100% 88.2% 96.8% None (many diffs) n/a
2 ccsbBroad304_02557 pLX_304 0% 88.2% 96.8% V5 (many diffs) n/a
3 TRCN0000469514 AATCAATCATCTATTCCACCTCCC pLX_317 72.2% 88.2% 96.8% V5 (many diffs) n/a
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