Transcript: Mouse NM_013477.3

Mus musculus ATPase, H+ transporting, lysosomal V0 subunit D1 (Atp6v0d1), mRNA.

Source:
NCBI, updated 2017-05-14
Taxon:
Mus musculus (mouse)
Gene:
Atp6v0d1 (11972)
Length:
1617
CDS:
129..1184

Additional Resources:

NCBI RefSeq record:
NM_013477.3
NBCI Gene record:
Atp6v0d1 (11972)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_013477.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000306517 CATCGAGATAATCCGAAATAC pLKO_005 659 CDS 100% 13.200 18.480 N Atp6v0d1 n/a
2 TRCN0000101890 GCCACTGACATGTCTAAGAAA pLKO.1 1422 3UTR 100% 5.625 3.938 N Atp6v0d1 n/a
3 TRCN0000332719 GCCACTGACATGTCTAAGAAA pLKO_005 1422 3UTR 100% 5.625 3.938 N Atp6v0d1 n/a
4 TRCN0000101892 AGGTCAAGAATGTAGCTGATT pLKO.1 916 CDS 100% 4.950 3.465 N Atp6v0d1 n/a
5 TRCN0000101893 CAGGTCAAGAATGTAGCTGAT pLKO.1 915 CDS 100% 4.050 2.835 N Atp6v0d1 n/a
6 TRCN0000332630 CAGGTCAAGAATGTAGCTGAT pLKO_005 915 CDS 100% 4.050 2.835 N Atp6v0d1 n/a
7 TRCN0000101891 GCCACATGAGAAACCATGCTT pLKO.1 376 CDS 100% 3.000 2.100 N Atp6v0d1 n/a
8 TRCN0000332629 GCCACATGAGAAACCATGCTT pLKO_005 376 CDS 100% 3.000 2.100 N Atp6v0d1 n/a
9 TRCN0000101894 GCCTTTGTGAAGCTTAAGGAA pLKO.1 1077 CDS 100% 3.000 2.100 N Atp6v0d1 n/a
10 TRCN0000332708 GCCTTTGTGAAGCTTAAGGAA pLKO_005 1077 CDS 100% 3.000 2.100 N Atp6v0d1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_013477.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02083 pDONR223 100% 90.1% 99.7% None (many diffs) n/a
2 ccsbBroad304_02083 pLX_304 0% 90.1% 99.7% V5 (many diffs) n/a
3 TRCN0000465911 AAACTTCGGATATCTATTGCGGCC pLX_317 40.2% 90.1% 99.7% V5 (many diffs) n/a
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