Transcript: Mouse NM_013541.1

Mus musculus glutathione S-transferase, pi 1 (Gstp1), mRNA.

Source:
NCBI, updated 2017-05-13
Taxon:
Mus musculus (mouse)
Gene:
Gstp1 (14870)
Length:
744
CDS:
50..682

Additional Resources:

NCBI RefSeq record:
NM_013541.1
NBCI Gene record:
Gstp1 (14870)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_013541.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000103230 CGGCAAATATGTCACCCTCAT pLKO.1 352 CDS 100% 4.050 5.670 N Gstp1 n/a
2 TRCN0000353988 CGGCAAATATGTCACCCTCAT pLKO_005 352 CDS 100% 4.050 5.670 N Gstp1 n/a
3 TRCN0000103234 CACCAACTATGAGAATGGTAA pLKO.1 376 CDS 100% 4.950 3.465 N Gstp1 n/a
4 TRCN0000325727 CACCAACTATGAGAATGGTAA pLKO_005 376 CDS 100% 4.950 3.465 N Gstp1 n/a
5 TRCN0000103231 GCCCAGATGGATATGGTGAAT pLKO.1 311 CDS 100% 4.950 2.970 N Gstp1 n/a
6 TRCN0000325655 GCCCAGATGGATATGGTGAAT pLKO_005 311 CDS 100% 4.950 2.970 N Gstp1 n/a
7 TRCN0000432024 CAGATCTCCTTTGCCGATTAC pLKO_005 491 CDS 100% 10.800 5.400 Y Gstp2 n/a
8 TRCN0000103232 CCAGATCTCCTTTGCCGATTA pLKO.1 490 CDS 100% 10.800 5.400 Y Gstp1 n/a
9 TRCN0000325654 CCAGATCTCCTTTGCCGATTA pLKO_005 490 CDS 100% 10.800 5.400 Y Gstp1 n/a
10 TRCN0000423541 AGGAGGAGGTGGTTACCATAG pLKO_005 138 CDS 100% 6.000 3.000 Y Gstp2 n/a
11 TRCN0000011905 CCTCACCCTTTACCAATCTAA pLKO.1 229 CDS 100% 5.625 2.813 Y Gstp2 n/a
12 TRCN0000421884 GCTCAAGCCCACTTGTCTGTA pLKO_005 178 CDS 100% 4.950 2.475 Y Gstp2 n/a
13 TRCN0000103233 CCTTTACCAATCTAATGCCAT pLKO.1 235 CDS 100% 2.640 1.320 Y Gstp1 n/a
14 TRCN0000325653 CCTTTACCAATCTAATGCCAT pLKO_005 235 CDS 100% 2.640 1.320 Y Gstp1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_013541.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06335 pDONR223 100% 83.4% 85.7% None (many diffs) n/a
2 ccsbBroad304_06335 pLX_304 0% 83.4% 85.7% V5 (many diffs) n/a
3 TRCN0000473257 CCAGAGGACCTAGAGCAGGACAAC pLX_317 66.6% 83.4% 85.7% V5 (many diffs) n/a
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