Transcript: Human NM_014044.6

Homo sapiens unc-50 inner nuclear membrane RNA binding protein (UNC50), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-08-06
Taxon:
Homo sapiens (human)
Gene:
UNC50 (25972)
Length:
1198
CDS:
184..963

Additional Resources:

NCBI RefSeq record:
NM_014044.6
NBCI Gene record:
UNC50 (25972)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_014044.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000242479 GGTTGCAGTTGGCTATTATAT pLKO_005 780 CDS 100% 15.000 21.000 N UNC50 n/a
2 TRCN0000167399 GAGAAGAAGATTCAATCGTAA pLKO.1 969 3UTR 100% 4.950 6.930 N UNC50 n/a
3 TRCN0000242482 GTTCATCTCTAACAAGTATTT pLKO_005 585 CDS 100% 13.200 10.560 N UNC50 n/a
4 TRCN0000242480 GGGATTCTTTGAGACAATAAA pLKO_005 498 CDS 100% 15.000 10.500 N UNC50 n/a
5 TRCN0000242481 GTATTGTGAAGTGATCATTTC pLKO_005 1001 3UTR 100% 10.800 7.560 N UNC50 n/a
6 TRCN0000256714 TTTAGTTGGAAATACCTTATG pLKO_005 756 CDS 100% 10.800 7.560 N Unc50 n/a
7 TRCN0000167842 GATAGCAACTTTAATGTGGTT pLKO.1 567 CDS 100% 2.640 1.848 N UNC50 n/a
8 TRCN0000256712 TGGCACTGGGATGGAACTTTA pLKO_005 902 CDS 100% 13.200 9.240 N Unc50 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_014044.6, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02893 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_02893 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000472180 CACCTTAGATAGAAAAGAGCAACT pLX_317 61.6% 100% 100% V5 n/a
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