Transcript: Human NM_014618.3

Homo sapiens BMP/retinoic acid inducible neural specific 1 (BRINP1), mRNA.

Source:
NCBI, updated 2019-08-02
Taxon:
Homo sapiens (human)
Gene:
BRINP1 (1620)
Length:
3171
CDS:
431..2716

Additional Resources:

NCBI RefSeq record:
NM_014618.3
NBCI Gene record:
BRINP1 (1620)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_014618.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000372082 ACGTTCTAGCAACTGTATAAA pLKO_005 2869 3UTR 100% 15.000 21.000 N BRINP1 n/a
2 TRCN0000220038 CAGTCGGCCTTGAGCTATATC pLKO.1 1160 CDS 100% 13.200 18.480 N BRINP1 n/a
3 TRCN0000372083 TGCTCCTCTTGTTGGATATTC pLKO_005 2508 CDS 100% 13.200 9.240 N BRINP1 n/a
4 TRCN0000372084 AGCTCGCATCATCCTACTTTG pLKO_005 927 CDS 100% 10.800 7.560 N BRINP1 n/a
5 TRCN0000220039 CTACCTACCCTACTGCGAAAT pLKO.1 2303 CDS 100% 10.800 7.560 N BRINP1 n/a
6 TRCN0000147811 GTACACACACAACAGAACAAA pLKO.1 2752 3UTR 100% 5.625 3.938 N BRINP1 n/a
7 TRCN0000180701 GAGAGCAAACTGCACCTTCAA pLKO.1 1094 CDS 100% 4.950 3.465 N BRINP1 n/a
8 TRCN0000150132 GTCAAGGATTTACAACCAGAT pLKO.1 615 CDS 100% 4.050 2.835 N BRINP1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_014618.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10768 pDONR223 100% 41.4% 40.8% None (many diffs) n/a
2 ccsbBroad304_10768 pLX_304 0% 41.4% 40.8% V5 (many diffs) n/a
3 TRCN0000473872 ACAACCCCCTACAATCCATCCATA pLX_317 46.9% 41.4% 40.8% V5 (many diffs) n/a
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