Transcript: Human NM_017817.3

Homo sapiens RAB20, member RAS oncogene family (RAB20), mRNA.

Source:
NCBI, updated 2019-09-27
Taxon:
Homo sapiens (human)
Gene:
RAB20 (55647)
Length:
1507
CDS:
204..908

Additional Resources:

NCBI RefSeq record:
NM_017817.3
NBCI Gene record:
RAB20 (55647)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_017817.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000048097 CTATGATGTGAATCACCGGCA pLKO.1 440 CDS 100% 0.540 0.756 N RAB20 n/a
2 TRCN0000379608 AGGAACAGCAAGGAATTATTT pLKO_005 987 3UTR 100% 15.000 10.500 N RAB20 n/a
3 TRCN0000382015 CGTCCTACAACTCTGACATTT pLKO_005 1297 3UTR 100% 13.200 9.240 N RAB20 n/a
4 TRCN0000381388 GGAAGAGTGCAGTCCCAATAT pLKO_005 587 CDS 100% 13.200 9.240 N RAB20 n/a
5 TRCN0000380229 AGGCAAGCTGTGATCTGAAAG pLKO_005 961 3UTR 100% 10.800 7.560 N RAB20 n/a
6 TRCN0000381603 GCCGTCACACACAGTGGATAT pLKO_005 839 CDS 100% 10.800 7.560 N RAB20 n/a
7 TRCN0000380657 TCCTCACCTATGATGTGAATC pLKO_005 433 CDS 100% 10.800 7.560 N RAB20 n/a
8 TRCN0000380385 TGGGTGTTGTGCCTGACTTTC pLKO_005 893 CDS 100% 10.800 7.560 N RAB20 n/a
9 TRCN0000381817 TTCAGCACCCTGGGTTGTTAC pLKO_005 1274 3UTR 100% 10.800 7.560 N RAB20 n/a
10 TRCN0000048093 CAGTGGATATATCCAGTCATA pLKO.1 850 CDS 100% 4.950 3.465 N RAB20 n/a
11 TRCN0000048094 CCTGTTTGAGACCCTCTTTGA pLKO.1 779 CDS 100% 4.950 3.465 N RAB20 n/a
12 TRCN0000048095 CGCTGAGCAAATGTGCTTTGA pLKO.1 725 CDS 100% 4.950 3.465 N RAB20 n/a
13 TRCN0000048096 CCTGAAGCAGTGGCGCTCCTA pLKO.1 329 CDS 100% 0.000 0.000 N RAB20 n/a
14 TRCN0000380752 GCAGAATGTTGGAGTGGAAAT pLKO_005 1026 3UTR 100% 10.800 6.480 N RAB20 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_017817.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08560 pDONR223 100% 99.8% 100% None 324T>C n/a
2 ccsbBroad304_08560 pLX_304 0% 99.8% 100% V5 324T>C n/a
3 TRCN0000480700 TTGACGCTGGAACGTCCTCTGTTC pLX_317 56.6% 99.8% 100% V5 324T>C n/a
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