Transcript: Mouse NM_018884.2

Mus musculus PDZ domain containing RING finger 3 (Pdzrn3), mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Pdzrn3 (55983)
Length:
4106
CDS:
10..3201

Additional Resources:

NCBI RefSeq record:
NM_018884.2
NBCI Gene record:
Pdzrn3 (55983)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_018884.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000099032 GCGCTTCTAACCAGTGAAGAA pLKO.1 1465 CDS 100% 4.950 6.930 N Pdzrn3 n/a
2 TRCN0000287892 GCGCTTCTAACCAGTGAAGAA pLKO_005 1465 CDS 100% 4.950 6.930 N Pdzrn3 n/a
3 TRCN0000099031 GCAAAGACTTATCCCGAGCAA pLKO.1 935 CDS 100% 2.640 3.696 N Pdzrn3 n/a
4 TRCN0000287893 GCAAAGACTTATCCCGAGCAA pLKO_005 935 CDS 100% 2.640 3.696 N Pdzrn3 n/a
5 TRCN0000099033 CCTGTCGGTGACTACTGTATA pLKO.1 3180 CDS 100% 13.200 10.560 N Pdzrn3 n/a
6 TRCN0000295258 CAAATTCATGACAGGATTATT pLKO_005 904 CDS 100% 15.000 10.500 N Pdzrn3 n/a
7 TRCN0000295326 TTCATTCATACAGCTTATATC pLKO_005 3654 3UTR 100% 13.200 9.240 N Pdzrn3 n/a
8 TRCN0000099030 GCCATCATGTTGATAGTCTAA pLKO.1 3293 3UTR 100% 4.950 3.465 N Pdzrn3 n/a
9 TRCN0000180817 GCCTGCAAATTCATGACAGGA pLKO.1 899 CDS 100% 2.640 1.848 N PDZRN3 n/a
10 TRCN0000295259 GAAGATGACATTGGGATATAT pLKO_005 1333 CDS 100% 15.000 9.000 N Pdzrn3 n/a
11 TRCN0000099034 GCATCCCATGACTACTATGAT pLKO.1 1183 CDS 100% 5.625 3.375 N Pdzrn3 n/a
12 TRCN0000166364 CACACACACACACACACACAA pLKO.1 3740 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_018884.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.