Transcript: Mouse NM_019457.2

Mus musculus leucine rich repeat containing 6 (testis) (Lrrc6), mRNA.

Source:
NCBI, updated 2017-05-21
Taxon:
Mus musculus (mouse)
Gene:
Lrrc6 (54562)
Length:
2084
CDS:
127..1548

Additional Resources:

NCBI RefSeq record:
NM_019457.2
NBCI Gene record:
Lrrc6 (54562)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_019457.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000178418 GCCAACTTACGTTCGAGTAAT pLKO.1 1155 CDS 100% 13.200 18.480 N Lrrc6 n/a
2 TRCN0000177192 GCCCAAGATAAGTTAAGTGAA pLKO.1 958 CDS 100% 4.950 6.930 N Lrrc6 n/a
3 TRCN0000176747 CTATAATTGAACTTCGAGCTT pLKO.1 1747 3UTR 100% 2.640 2.112 N Lrrc6 n/a
4 TRCN0000177234 GAACTTAGCATTGAACAACAT pLKO.1 339 CDS 100% 4.950 3.465 N Lrrc6 n/a
5 TRCN0000176804 GCAAATTGTTCAAACTCAGAA pLKO.1 1871 3UTR 100% 4.950 3.465 N Lrrc6 n/a
6 TRCN0000176471 CAACAGTTAAAGTGGTTGGAT pLKO.1 544 CDS 100% 3.000 2.100 N Lrrc6 n/a
7 TRCN0000181976 CCAGACTTTGAGGATAACCCA pLKO.1 1507 CDS 100% 0.750 0.525 N Lrrc6 n/a
8 TRCN0000177279 GTCTTCACTTATGCAATAGAT pLKO.1 1826 3UTR 100% 5.625 3.375 N Lrrc6 n/a
9 TRCN0000176884 GAAAGATGATGAGAAACACAA pLKO.1 1068 CDS 100% 4.950 2.970 N Lrrc6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_019457.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.