Transcript: Mouse NM_019660.3

Mus musculus MYC binding protein (Mycbp), mRNA.

Source:
NCBI, updated 2017-05-14
Taxon:
Mus musculus (mouse)
Gene:
Mycbp (56309)
Length:
1485
CDS:
61..372

Additional Resources:

NCBI RefSeq record:
NM_019660.3
NBCI Gene record:
Mycbp (56309)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_019660.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000095861 CCTAGAATTGGCAGAAATGAA pLKO.1 258 CDS 100% 5.625 4.500 N Mycbp n/a
2 TRCN0000353790 CCTAGAATTGGCAGAAATGAA pLKO_005 258 CDS 100% 5.625 4.500 N Mycbp n/a
3 TRCN0000305594 AGCGTGCTGAATAGGATTCTT pLKO_005 359 CDS 100% 5.625 3.938 N Mycbp n/a
4 TRCN0000418296 AGCGTGCTGAATAGGATTCTT pLKO_005 359 CDS 100% 5.625 3.938 N MYCBP n/a
5 TRCN0000095862 CTTATATGAAGAACCAGAGAA pLKO.1 159 CDS 100% 4.950 3.465 N Mycbp n/a
6 TRCN0000095860 GAGAAATATGAAGCTACTGTA pLKO.1 280 CDS 100% 4.950 3.465 N Mycbp n/a
7 TRCN0000323584 GAGAAATATGAAGCTACTGTA pLKO_005 280 CDS 100% 4.950 3.465 N Mycbp n/a
8 TRCN0000095863 CCTTATATGAAGAACCAGAGA pLKO.1 158 CDS 100% 2.640 1.848 N Mycbp n/a
9 TRCN0000323585 CCTTATATGAAGAACCAGAGA pLKO_005 158 CDS 100% 2.640 1.848 N Mycbp n/a
10 TRCN0000305595 GAATAGCTTGTATAGTATATG pLKO_005 420 3UTR 100% 13.200 7.920 N Mycbp n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_019660.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02955 pDONR223 100% 95.1% 97% None (many diffs) n/a
2 ccsbBroad304_02955 pLX_304 0% 95.1% 97% V5 (many diffs) n/a
3 TRCN0000480712 ATCTAAAATCCATCACGACCTCTT pLX_317 100% 95.1% 97% V5 (many diffs) n/a
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