Transcript: Human NM_019897.2

Homo sapiens olfactory receptor family 2 subfamily S member 2 (gene/pseudogene) (OR2S2), mRNA.

Source:
NCBI, updated 2019-09-21
Taxon:
Homo sapiens (human)
Gene:
OR2S2 (56656)
Length:
1047
CDS:
57..1016

Additional Resources:

NCBI RefSeq record:
NM_019897.2
NBCI Gene record:
OR2S2 (56656)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_019897.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000357834 TATGGGAAGCCTAAGTCTAAG pLKO_005 834 CDS 100% 10.800 15.120 N OR2S2 n/a
2 TRCN0000009377 CCCGGTTCTGTTCATCTCTTT pLKO.1 686 CDS 100% 4.950 6.930 N OR2S2 n/a
3 TRCN0000357833 TCGTCTTCTACGGGACCTTAT pLKO_005 805 CDS 100% 10.800 8.640 N OR2S2 n/a
4 TRCN0000009378 GCCTAAGTCTAAGGACTCCAT pLKO.1 842 CDS 100% 2.640 2.112 N OR2S2 n/a
5 TRCN0000357832 TGAGATTCTGGCTGTTCTAAA pLKO_005 596 CDS 100% 13.200 9.240 N OR2S2 n/a
6 TRCN0000357835 AGCAGACAAAGAGGATCTTTC pLKO_005 866 CDS 100% 10.800 7.560 N OR2S2 n/a
7 TRCN0000009379 CTGAGCATGATGGCATTTGAT pLKO.1 402 CDS 100% 5.625 3.938 N OR2S2 n/a
8 TRCN0000009381 CCTGCTGATGTACCTCGTGAT pLKO.1 152 CDS 100% 4.050 2.835 N OR2S2 n/a
9 TRCN0000009380 GAGCAGACAAAGAGGATCTTT pLKO.1 865 CDS 100% 5.625 3.375 N OR2S2 n/a
10 TRCN0000188465 CCTGAGGAACAAGGATGTGAA pLKO.1 950 CDS 100% 4.950 2.475 Y Olfr156 n/a
11 TRCN0000188297 CGCCCATGTACTTCTTCCTAA pLKO.1 229 CDS 100% 4.950 2.475 Y Olfr281 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_019897.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03733 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_03733 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000468846 ATCCTCCCCGATCACTCGTGTCTT pLX_317 28.3% 100% 100% V5 n/a
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