Transcript: Mouse NM_019967.2

Mus musculus bone morphogenic protein/retinoic acid inducible neural specific 1 (Brinp1), mRNA.

Source:
NCBI, updated 2017-05-14
Taxon:
Mus musculus (mouse)
Gene:
Brinp1 (56710)
Length:
3354
CDS:
435..2717

Additional Resources:

NCBI RefSeq record:
NM_019967.2
NBCI Gene record:
Brinp1 (56710)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_019967.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000414477 AGGAATTTGATTGGCTTATTT pLKO_005 541 CDS 100% 15.000 21.000 N Brinp1 n/a
2 TRCN0000433779 ACGTGTTCTAGCGACTGTATA pLKO_005 2912 3UTR 100% 13.200 18.480 N Brinp1 n/a
3 TRCN0000417347 ATAAGGGCTACAAGCTGTATA pLKO_005 1786 CDS 100% 13.200 18.480 N Brinp1 n/a
4 TRCN0000011936 CCAGCTTGCATCATCCTACTT pLKO.1 929 CDS 100% 4.950 3.960 N Brinp1 n/a
5 TRCN0000415180 GAGGAAATGGACGTAGATAAA pLKO_005 3172 3UTR 100% 13.200 9.240 N Brinp1 n/a
6 TRCN0000180701 GAGAGCAAACTGCACCTTCAA pLKO.1 1098 CDS 100% 4.950 3.465 N BRINP1 n/a
7 TRCN0000011935 GCAAGGATTTACAACCAGATA pLKO.1 620 CDS 100% 4.950 3.465 N Brinp1 n/a
8 TRCN0000011933 GCAATGAGATTCGCCTGGATA pLKO.1 1954 CDS 100% 4.950 3.465 N Brinp1 n/a
9 TRCN0000011934 CCCATGTATCATAGGTGGGAA pLKO.1 1712 CDS 100% 2.640 1.848 N Brinp1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_019967.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10768 pDONR223 100% 39.4% 40.1% None (many diffs) n/a
2 ccsbBroad304_10768 pLX_304 0% 39.4% 40.1% V5 (many diffs) n/a
3 TRCN0000473872 ACAACCCCCTACAATCCATCCATA pLX_317 46.9% 39.4% 40.1% V5 (many diffs) n/a
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