Transcript: Mouse NM_020605.3

Mus musculus junctophilin 3 (Jph3), mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Jph3 (57340)
Length:
3903
CDS:
65..2299

Additional Resources:

NCBI RefSeq record:
NM_020605.3
NBCI Gene record:
Jph3 (57340)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_020605.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000124301 CGCCAAGCAGAAAGCCGAGAT pLKO.1 1192 CDS 100% 1.350 1.080 N Jph3 n/a
2 TRCN0000124300 CCAGATGTCCTGCGATGATAT pLKO.1 1375 CDS 100% 13.200 9.240 N Jph3 n/a
3 TRCN0000124299 CCACAGAAGAACAACATGATT pLKO.1 2404 3UTR 100% 5.625 3.938 N Jph3 n/a
4 TRCN0000124303 CCAAGCGGCAACACGTACCAA pLKO.1 230 CDS 100% 1.000 0.700 N Jph3 n/a
5 TRCN0000124302 GAGCAACTACAAGCTGGAGAT pLKO.1 1888 CDS 100% 4.050 2.430 N Jph3 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_020605.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08721 pDONR223 100% 87.8% 90.3% None (many diffs) n/a
2 ccsbBroad304_08721 pLX_304 0% 87.8% 90.3% V5 (many diffs) n/a
3 TRCN0000468442 TGATGCCCGGGAGCAGTTAATGAT pLX_317 17.3% 87.8% 90.3% V5 (many diffs) n/a
Download CSV