Transcript: Human NM_020746.5

Homo sapiens mitochondrial antiviral signaling protein (MAVS), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-16
Taxon:
Homo sapiens (human)
Gene:
MAVS (57506)
Length:
11731
CDS:
138..1760

Additional Resources:

NCBI RefSeq record:
NM_020746.5
NBCI Gene record:
MAVS (57506)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_020746.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000236030 TTTACCAAGGGTTGGATATAT pLKO_005 2962 3UTR 100% 15.000 21.000 N MAVS n/a
2 TRCN0000236032 TAAGTATATCTGCCGCAATTT pLKO_005 164 CDS 100% 13.200 18.480 N MAVS n/a
3 TRCN0000148945 CAAGTTGCCAACTAGCTCAAA pLKO.1 1109 CDS 100% 4.950 6.930 N MAVS n/a
4 TRCN0000149786 CTGCCGCAATTTCAGCAATTT pLKO.1 173 CDS 100% 13.200 10.560 N MAVS n/a
5 TRCN0000149112 GCATTTACCAAGGGTTGGATA pLKO.1 2959 3UTR 100% 4.950 3.960 N MAVS n/a
6 TRCN0000236029 CCAGAGGAGAATGAGTATAAG pLKO_005 1500 CDS 100% 13.200 9.240 N MAVS n/a
7 TRCN0000236031 ATGTGGATGTTGTAGAGATTC pLKO_005 199 CDS 100% 10.800 7.560 N MAVS n/a
8 TRCN0000149206 GCATCTCTTCAATACCCTTCA pLKO.1 305 CDS 100% 4.050 2.835 N MAVS n/a
9 TRCN0000146651 CCTTACTTTATCTTGTGCCTT pLKO.1 3305 3UTR 100% 2.640 1.848 N MAVS n/a
10 TRCN0000060503 CCTCTCAAGTAGCTGGGATTA pLKO.1 6613 3UTR 100% 10.800 5.400 Y NCCRP1 n/a
11 TRCN0000155576 CCTCTCAAGTAGCTGGGATTA pLKO.1 6613 3UTR 100% 10.800 5.400 Y KLHL30 n/a
12 TRCN0000165697 CCTCTCAAGTAGCTGGGATTA pLKO.1 6613 3UTR 100% 10.800 5.400 Y SLC48A1 n/a
13 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 3985 3UTR 100% 4.950 2.475 Y ERAP2 n/a
14 TRCN0000165027 GAACTCCTGACCTCAAGTGAT pLKO.1 6714 3UTR 100% 4.950 2.475 Y LOC387873 n/a
15 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 3986 3UTR 100% 13.200 6.600 Y LIAS n/a
16 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 5043 3UTR 100% 5.625 2.813 Y KLHL30 n/a
17 TRCN0000157610 GTGGCATGATCTCAGCTCATT pLKO.1 5274 3UTR 100% 4.950 2.475 Y CCNJL n/a
18 TRCN0000130146 CAGGTTCAAGTGATTCTCCTA pLKO.1 6586 3UTR 100% 2.640 1.320 Y DICER1-AS1 n/a
19 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 5043 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_020746.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.