Transcript: Human NM_020770.3

Homo sapiens cingulin (CGN), mRNA.

Source:
NCBI, updated 2019-08-07
Taxon:
Homo sapiens (human)
Gene:
CGN (57530)
Length:
5101
CDS:
144..3755

Additional Resources:

NCBI RefSeq record:
NM_020770.3
NBCI Gene record:
CGN (57530)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_020770.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000235551 GTGAGGAGGAAGGTTAGTTTG pLKO_005 1140 CDS 100% 10.800 15.120 N CGN n/a
2 TRCN0000005713 CGGCTGGAAACAGAGTTAGAT pLKO.1 3060 CDS 100% 5.625 7.875 N CGN n/a
3 TRCN0000235547 AGGCCCAGCTGGAGGATTATA pLKO_005 2761 CDS 100% 15.000 10.500 N CGN n/a
4 TRCN0000235548 CCTATGGGTGACCCAATTATT pLKO_005 3842 3UTR 100% 15.000 10.500 N CGN n/a
5 TRCN0000235550 TGCTAACAGATCGGGTGAATC pLKO_005 3103 CDS 100% 10.800 7.560 N CGN n/a
6 TRCN0000005715 GACTCACTCATCAACAAGTTT pLKO.1 678 CDS 100% 5.625 3.938 N CGN n/a
7 TRCN0000005712 GCACATTCATACCTCTCCAAA pLKO.1 4407 3UTR 100% 4.950 3.465 N CGN n/a
8 TRCN0000005714 GCAGCATGTCAATGACCAGAA pLKO.1 3422 CDS 100% 4.050 2.835 N CGN n/a
9 TRCN0000005716 CCCGAGCTAGTGCTGGAGATA pLKO.1 1993 CDS 100% 1.650 1.155 N CGN n/a
10 TRCN0000235549 TTGGACCAGGGTGAAGATTTA pLKO_005 1434 CDS 100% 13.200 7.920 N CGN n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_020770.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03828 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_03828 pLX_304 0% 100% 100% V5 n/a
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