Transcript: Human NM_020919.4

Homo sapiens alsin Rho guanine nucleotide exchange factor ALS2 (ALS2), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-26
Taxon:
Homo sapiens (human)
Gene:
ALS2 (57679)
Length:
6675
CDS:
118..5091

Additional Resources:

NCBI RefSeq record:
NM_020919.4
NBCI Gene record:
ALS2 (57679)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_020919.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000416378 AGTCCTATCTTAAGCGAATTT pLKO_005 4364 CDS 100% 13.200 18.480 N ALS2 n/a
2 TRCN0000433173 GTAACGAGTTCTGGATTATTG pLKO_005 4528 CDS 100% 13.200 18.480 N ALS2 n/a
3 TRCN0000047804 CCTGGATTGTTGTCACAAGTT pLKO.1 1570 CDS 100% 4.950 6.930 N ALS2 n/a
4 TRCN0000432982 GAGGGCAACTTTCACCTTAAT pLKO_005 3712 CDS 100% 13.200 10.560 N ALS2 n/a
5 TRCN0000047805 CCTACTTCAAACCTAGTCTAT pLKO.1 3902 CDS 100% 4.950 3.960 N ALS2 n/a
6 TRCN0000433466 AGAATGAGCCTTACCAATAAT pLKO_005 5218 3UTR 100% 15.000 10.500 N ALS2 n/a
7 TRCN0000415345 AGACTACATTGAAGGTTATTT pLKO_005 3843 CDS 100% 15.000 10.500 N ALS2 n/a
8 TRCN0000421446 ATCTACTACAGAGTGTTATAA pLKO_005 5119 3UTR 100% 15.000 10.500 N ALS2 n/a
9 TRCN0000427750 AGCAGGGAAGAACAGGTTAAA pLKO_005 1462 CDS 100% 13.200 9.240 N ALS2 n/a
10 TRCN0000429963 AGGAGCCAACCGCAGGTTATT pLKO_005 4320 CDS 100% 13.200 9.240 N ALS2 n/a
11 TRCN0000041029 CCTGCCATTGATTTCCTAAAT pLKO.1 2527 CDS 100% 13.200 9.240 N Als2 n/a
12 TRCN0000316814 CCTGCCATTGATTTCCTAAAT pLKO_005 2527 CDS 100% 13.200 9.240 N Als2 n/a
13 TRCN0000041031 GCAGCAGATCAGCACAACATT pLKO.1 4794 CDS 100% 5.625 3.938 N Als2 n/a
14 TRCN0000316885 GCAGCAGATCAGCACAACATT pLKO_005 4794 CDS 100% 5.625 3.938 N Als2 n/a
15 TRCN0000047806 GCAGGATTCCAGTTCTTGTTA pLKO.1 2721 CDS 100% 5.625 3.938 N ALS2 n/a
16 TRCN0000047807 GCTATGCTTCTGGTGAAGTAT pLKO.1 3464 CDS 100% 5.625 3.938 N ALS2 n/a
17 TRCN0000047803 CGACTAAATAAGCAGCCAGAT pLKO.1 4645 CDS 100% 4.050 2.835 N ALS2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_020919.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.