Transcript: Human NM_022164.3

Homo sapiens tubulointerstitial nephritis antigen like 1 (TINAGL1), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-09-27
Taxon:
Homo sapiens (human)
Gene:
TINAGL1 (64129)
Length:
2207
CDS:
97..1500

Additional Resources:

NCBI RefSeq record:
NM_022164.3
NBCI Gene record:
TINAGL1 (64129)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_022164.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000373692 TGCATGGAGGTCGTATCTATC pLKO_005 413 CDS 100% 10.800 15.120 N TINAGL1 n/a
2 TRCN0000073776 CCTATACAAGGGAGGCATCTA pLKO.1 1218 CDS 100% 4.950 6.930 N TINAGL1 n/a
3 TRCN0000073777 TCGGTCATGAACATGCATGAA pLKO.1 652 CDS 100% 0.495 0.396 N TINAGL1 n/a
4 TRCN0000373693 CAGATGGAAGGACGCTCAAAT pLKO_005 1334 CDS 100% 13.200 9.240 N TINAGL1 n/a
5 TRCN0000373774 CCATCAACCAGGGCAACTATG pLKO_005 542 CDS 100% 10.800 7.560 N TINAGL1 n/a
6 TRCN0000073775 CGGTCATGAACATGCATGAAA pLKO.1 653 CDS 100% 0.563 0.394 N TINAGL1 n/a
7 TRCN0000073774 CATCTGTTACTGTGACCTCTT pLKO.1 303 CDS 100% 4.050 2.430 N TINAGL1 n/a
8 TRCN0000073773 CCTCTCAAGTAGCTGGGACTA pLKO.1 1959 3UTR 100% 4.050 2.025 Y TINAGL1 n/a
9 TRCN0000264189 CAAGTAGCTGGGACTACAGGA pLKO_005 1964 3UTR 100% 2.640 1.320 Y LINC01098 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_022164.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03929 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_03929 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000467670 AGTGTACCCACATTATCACCTCTT pLX_317 21.9% 100% 100% V5 n/a
4 ccsbBroadEn_15964 pDONR223 0% 46.6% 46.6% None 1_747del n/a
5 ccsbBroad304_15964 pLX_304 0% 46.6% 46.6% V5 1_747del n/a
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