Transcript: Mouse NM_025394.3

Mus musculus translocase of outer mitochondrial membrane 7 homolog (yeast) (Tomm7), mRNA.

Source:
NCBI, updated 2017-05-20
Taxon:
Mus musculus (mouse)
Gene:
Tomm7 (66169)
Length:
1126
CDS:
73..240

Additional Resources:

NCBI RefSeq record:
NM_025394.3
NBCI Gene record:
Tomm7 (66169)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_025394.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000181095 CGTGATTTACCTGGGATTTAC pLKO.1 162 CDS 100% 13.200 18.480 N Tomm7 n/a
2 TRCN0000216549 GTAGATTAAATGAGTCTAGAA pLKO.1 923 3UTR 100% 4.950 6.930 N Tomm7 n/a
3 TRCN0000257589 CTCTTGGTATGTATGTTTATA pLKO_005 447 3UTR 100% 15.000 10.500 N Tomm7 n/a
4 TRCN0000247031 GGAGTTCCTGGTTGGTCATTT pLKO_005 728 3UTR 100% 13.200 9.240 N Tomm7 n/a
5 TRCN0000217290 GTGCTTGAGTACTGCCTTAAA pLKO.1 689 3UTR 100% 13.200 9.240 N Tomm7 n/a
6 TRCN0000247030 TAAGTATGCTGGGACTAATAG pLKO_005 615 3UTR 100% 13.200 9.240 N Tomm7 n/a
7 TRCN0000247033 ACTGTAAGAAATGACGGTTTA pLKO_005 846 3UTR 100% 10.800 7.560 N Tomm7 n/a
8 TRCN0000247032 TTGTACCAGTGTAGAAGTAAG pLKO_005 473 3UTR 100% 10.800 7.560 N Tomm7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_025394.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03434 pDONR223 100% 90.3% 94.5% None (many diffs) n/a
2 ccsbBroad304_03434 pLX_304 0% 90.3% 94.5% V5 (many diffs) n/a
3 TRCN0000474745 CTGACGCGCGGGAAAGGTCGAAAC pLX_317 100% 90.3% 94.5% V5 (many diffs) n/a
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