Transcript: Mouse NM_025840.3

Mus musculus basic leucine zipper and W2 domains 2 (Bzw2), mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Bzw2 (66912)
Length:
1889
CDS:
166..1425

Additional Resources:

NCBI RefSeq record:
NM_025840.3
NBCI Gene record:
Bzw2 (66912)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_025840.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000437591 AGGTGGTGCTTTACGTCAAAG pLKO_005 986 CDS 100% 10.800 15.120 N Bzw2 n/a
2 TRCN0000096855 CGATTAGATTACCGTCGCTAT pLKO.1 337 CDS 100% 4.050 5.670 N Bzw2 n/a
3 TRCN0000418953 AGGAATACTGCTACGACAACA pLKO_005 1205 CDS 100% 4.950 3.960 N Bzw2 n/a
4 TRCN0000139465 GATGACCAACCACTGTGTGTT pLKO.1 441 CDS 100% 4.950 3.960 N BZW2 n/a
5 TRCN0000096857 GCATCATGAATGCGGTGGAAT pLKO.1 1064 CDS 100% 4.950 3.960 N Bzw2 n/a
6 TRCN0000096856 CCGAAACTATGCTCAGGTCTT pLKO.1 489 CDS 100% 4.050 3.240 N Bzw2 n/a
7 TRCN0000140053 CCGAAACTATGCTCAGGTCTT pLKO.1 489 CDS 100% 4.050 3.240 N BZW2 n/a
8 TRCN0000096858 GCGATACTGAAGTGGTATAAA pLKO.1 1294 CDS 100% 15.000 10.500 N Bzw2 n/a
9 TRCN0000414051 ACCTTGAAGCTGTAGCCAAAT pLKO_005 296 CDS 100% 10.800 7.560 N Bzw2 n/a
10 TRCN0000422489 CCAAAGGCAAGAGCGTCTTTC pLKO_005 1328 CDS 100% 10.800 7.560 N Bzw2 n/a
11 TRCN0000430118 CTCCTCTTCCTTAAAGCATTT pLKO_005 574 CDS 100% 10.800 7.560 N Bzw2 n/a
12 TRCN0000419501 CTCATCAGGAGATACAAGTAT pLKO_005 517 CDS 100% 5.625 3.938 N Bzw2 n/a
13 TRCN0000427477 TGTGGATCATTTCGCTAAGTA pLKO_005 843 CDS 100% 5.625 3.938 N Bzw2 n/a
14 TRCN0000096854 GCCACTTCAATAGTTGTGTTT pLKO.1 1784 3UTR 100% 4.950 3.465 N Bzw2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_025840.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03047 pDONR223 100% 91.7% 99% None (many diffs) n/a
2 ccsbBroad304_03047 pLX_304 0% 91.7% 99% V5 (many diffs) n/a
3 TRCN0000473591 AGGATATTAACCGCGTTTGTCCAC pLX_317 33.5% 91.7% 99% V5 (many diffs) n/a
4 ccsbBroadEn_15799 pDONR223 0% 91.6% 99% None (many diffs) n/a
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