Transcript: Mouse NM_026122.4

Mus musculus high mobility group nucleosomal binding domain 3 (Hmgn3), transcript variant a, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Hmgn3 (94353)
Length:
923
CDS:
163..462

Additional Resources:

NCBI RefSeq record:
NM_026122.4
NBCI Gene record:
Hmgn3 (94353)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_026122.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000233314 CGCGAAACCTGTTCCACCAAA pLKO_005 255 CDS 100% 4.950 6.930 N Hmgn3 n/a
2 TRCN0000233313 GATGGAACCAAGCTAACTAAG pLKO_005 202 CDS 100% 10.800 8.640 N Hmgn3 n/a
3 TRCN0000108997 AGATGGAACCAAGCTAACTAA pLKO.1 201 CDS 100% 5.625 4.500 N Hmgn3 n/a
4 TRCN0000108995 CGTGTGAAATGGATTCAGCAT pLKO.1 681 3UTR 100% 2.640 2.112 N Hmgn3 n/a
5 TRCN0000233317 CATCCTCAAGTCACGCAAATA pLKO_005 640 3UTR 100% 13.200 9.240 N Hmgn3 n/a
6 TRCN0000233316 CACAGAGAACTGAATCTATAG pLKO_005 425 CDS 100% 10.800 7.560 N Hmgn3 n/a
7 TRCN0000108998 ACCGGAGTCTAAACCAAGAAA pLKO.1 276 CDS 100% 5.625 3.938 N Hmgn3 n/a
8 TRCN0000108996 CCTGGAACAAAGATTAGCAGA pLKO.1 316 CDS 100% 2.640 1.848 N Hmgn3 n/a
9 TRCN0000108999 CCGCGAAACCTGTTCCACCAA pLKO.1 254 CDS 100% 0.880 0.616 N Hmgn3 n/a
10 TRCN0000233315 AGAACCTGGAACAAAGATTAG pLKO_005 312 CDS 100% 10.800 6.480 N Hmgn3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_026122.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02139 pDONR223 100% 71% 69.6% None (many diffs) n/a
2 ccsbBroad304_02139 pLX_304 0% 71% 69.6% V5 (many diffs) n/a
3 TRCN0000466191 GATACAAGTAGCGGCCGGCTATGC pLX_317 100% 71% 69.6% V5 (many diffs) n/a
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