Transcript: Mouse NM_026195.3

Mus musculus 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase (Atic), mRNA.

Source:
NCBI, updated 2017-05-21
Taxon:
Mus musculus (mouse)
Gene:
Atic (108147)
Length:
2611
CDS:
101..1879

Additional Resources:

NCBI RefSeq record:
NM_026195.3
NBCI Gene record:
Atic (108147)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_026195.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000097590 CCGCTCAATACGATGAAGCAA pLKO.1 645 CDS 100% 3.000 4.200 N Atic n/a
2 TRCN0000097593 CCGTTGCATATGCAAGAGCAA pLKO.1 999 CDS 100% 0.000 0.000 N Atic n/a
3 TRCN0000097592 CGAGTGCTGTCCATGAAGTTT pLKO.1 1514 CDS 100% 5.625 3.938 N Atic n/a
4 TRCN0000097591 GCCAGGCTTGATTTCAACCTT pLKO.1 365 CDS 100% 3.000 2.100 N Atic n/a
5 TRCN0000097589 GCTCTTTCTTTCTCCAGAATT pLKO.1 2305 3UTR 100% 0.000 0.000 N Atic n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_026195.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00118 pDONR223 100% 85.7% 91% None (many diffs) n/a
2 ccsbBroad304_00118 pLX_304 0% 85.7% 91% V5 (many diffs) n/a
3 TRCN0000478767 CGTGACGAGGATAACACTACGGGA pLX_317 25.5% 85.7% 91% V5 (many diffs) n/a
Download CSV