Transcript: Mouse NM_026502.2

Mus musculus RIKEN cDNA 1110004E09 gene (1110004E09Rik), mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
1110004E09Rik (68001)
Length:
1163
CDS:
130..1002

Additional Resources:

NCBI RefSeq record:
NM_026502.2
NBCI Gene record:
1110004E09Rik (68001)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_026502.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000179683 GCGATAGTGTCTAAGAAACAA pLKO.1 490 CDS 100% 5.625 7.875 N 1110004E09Rik n/a
2 TRCN0000298005 GCGATAGTGTCTAAGAAACAA pLKO_005 490 CDS 100% 5.625 7.875 N 1110004E09Rik n/a
3 TRCN0000137892 GATGGTGAAAGATGCCTTGGA pLKO.1 540 CDS 100% 2.640 3.696 N CFAP298 n/a
4 TRCN0000184423 GCTGACAACACGGCTTTGAAA pLKO.1 937 CDS 100% 5.625 3.938 N 1110004E09Rik n/a
5 TRCN0000298007 GCTGACAACACGGCTTTGAAA pLKO_005 937 CDS 100% 5.625 3.938 N 1110004E09Rik n/a
6 TRCN0000184159 CCTCAACCCACCAAATTCCTA pLKO.1 1025 3UTR 100% 3.000 2.100 N 1110004E09Rik n/a
7 TRCN0000292613 CCTCAACCCACCAAATTCCTA pLKO_005 1025 3UTR 100% 3.000 2.100 N 1110004E09Rik n/a
8 TRCN0000196061 GCTGTTCTACCACAGAAGACA pLKO.1 858 CDS 100% 3.000 2.100 N 1110004E09Rik n/a
9 TRCN0000292545 GCTGTTCTACCACAGAAGACA pLKO_005 858 CDS 100% 3.000 2.100 N 1110004E09Rik n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_026502.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03741 pDONR223 100% 84.3% 92.4% None (many diffs) n/a
2 ccsbBroad304_03741 pLX_304 0% 84.3% 92.4% V5 (many diffs) n/a
3 TRCN0000474470 TGCGATTAAGAACCGAAAGTTTCA pLX_317 37.6% 84.3% 92.4% V5 (many diffs) n/a
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