Transcript: Mouse NM_026718.2

Mus musculus ankyrin repeat domain 13a (Ankrd13a), mRNA.

Source:
NCBI, updated 2017-05-14
Taxon:
Mus musculus (mouse)
Gene:
Ankrd13a (68420)
Length:
3316
CDS:
90..1856

Additional Resources:

NCBI RefSeq record:
NM_026718.2
NBCI Gene record:
Ankrd13a (68420)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_026718.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000178073 GAACACTTCGATCTTTCCCAA pLKO.1 687 CDS 100% 2.640 3.696 N Ankrd13a n/a
2 TRCN0000297223 GAACACTTCGATCTTTCCCAA pLKO_005 687 CDS 100% 2.640 3.696 N Ankrd13a n/a
3 TRCN0000182611 GCTACACCAAAGGCAGCTAAT pLKO.1 2549 3UTR 100% 10.800 8.640 N Ankrd13a n/a
4 TRCN0000279525 GCTACACCAAAGGCAGCTAAT pLKO_005 2549 3UTR 100% 10.800 8.640 N Ankrd13a n/a
5 TRCN0000279629 TAAACAACGTGAGCGTGATAA pLKO_005 901 CDS 100% 13.200 9.240 N Ankrd13a n/a
6 TRCN0000297225 CACGGATCACATTCGGAAATG pLKO_005 1351 CDS 100% 10.800 7.560 N Ankrd13a n/a
7 TRCN0000200277 CCAACGATGTCTGTCGCATAT pLKO.1 514 CDS 100% 10.800 7.560 N Ankrd13a n/a
8 TRCN0000198233 GCTGTCTCTCACTGAGAAATA pLKO.1 1835 CDS 100% 13.200 7.920 N Ankrd13a n/a
9 TRCN0000297224 GCTGTCTCTCACTGAGAAATA pLKO_005 1835 CDS 100% 13.200 7.920 N Ankrd13a n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_026718.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12919 pDONR223 100% 37.9% 39.2% None (many diffs) n/a
2 ccsbBroad304_12919 pLX_304 0% 37.9% 39.2% V5 (many diffs) n/a
3 TRCN0000468810 TCGCTGGAGGCTTTATGGGGCCGT pLX_317 50.8% 37.9% 39.2% V5 (many diffs) n/a
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