Transcript: Mouse NM_026865.2

Mus musculus prostaglandin E synthase 3 like (Ptges3l), mRNA.

Source:
NCBI, updated 2017-06-14
Taxon:
Mus musculus (mouse)
Gene:
Ptges3l (73635)
Length:
1461
CDS:
711..1106

Additional Resources:

NCBI RefSeq record:
NM_026865.2
NBCI Gene record:
Ptges3l (73635)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_026865.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000115189 GCTCTCTGTGGACTTCGATAA pLKO.1 1007 CDS 100% 10.800 8.640 N Ptges3l n/a
2 TRCN0000115188 AGGCTCACAAAGGAGGATATA pLKO.1 975 CDS 100% 13.200 9.240 N Ptges3l n/a
3 TRCN0000115187 GAGCTGTATAACGAGATTGAA pLKO.1 855 CDS 100% 5.625 3.938 N Ptges3l n/a
4 TRCN0000115186 GCCTTCTTCAACTACTTGGTT pLKO.1 1180 3UTR 100% 3.000 2.100 N Ptges3l n/a
5 TRCN0000115190 CATTACTTGCTTTGTGAGGAA pLKO.1 929 CDS 100% 2.640 1.848 N Ptges3l n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_026865.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09044 pDONR223 100% 18% 18.9% None (many diffs) n/a
2 ccsbBroad304_09044 pLX_304 0% 18% 18.9% V5 (many diffs) n/a
3 TRCN0000467834 ACAGACACAACCAACTTTGAGGAA pLX_317 28.9% 18% 18.9% V5 (many diffs) n/a
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