Transcript: Mouse NM_027554.2

Mus musculus ubiquitin specific peptidase 38 (Usp38), mRNA.

Source:
NCBI, updated 2017-05-13
Taxon:
Mus musculus (mouse)
Gene:
Usp38 (74841)
Length:
4711
CDS:
471..3599

Additional Resources:

NCBI RefSeq record:
NM_027554.2
NBCI Gene record:
Usp38 (74841)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_027554.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000306651 GCTTACGCACCTCGGATATTT pLKO_005 1974 CDS 100% 15.000 21.000 N Usp38 n/a
2 TRCN0000306586 GTAACCTATAGCATATCTATC pLKO_005 3668 3UTR 100% 10.800 15.120 N Usp38 n/a
3 TRCN0000030875 GCGACTCAGTTGTGAATCAAA pLKO.1 2476 CDS 100% 5.625 7.875 N Usp38 n/a
4 TRCN0000327300 GCGACTCAGTTGTGAATCAAA pLKO_005 2476 CDS 100% 5.625 7.875 N Usp38 n/a
5 TRCN0000030878 CCATGTGATTGTCCCTCATAT pLKO.1 1514 CDS 100% 13.200 9.240 N Usp38 n/a
6 TRCN0000030874 GCATGTAGATACGTGGGTAAT pLKO.1 1322 CDS 100% 10.800 7.560 N Usp38 n/a
7 TRCN0000030877 CCCAATGGATTTGATGACAAT pLKO.1 3501 CDS 100% 4.950 3.465 N Usp38 n/a
8 TRCN0000327299 CCCAATGGATTTGATGACAAT pLKO_005 3501 CDS 100% 4.950 3.465 N Usp38 n/a
9 TRCN0000030876 CCCAAATTAGTGCCCTACCTA pLKO.1 2973 CDS 100% 3.000 2.100 N Usp38 n/a
10 TRCN0000327301 CCCAAATTAGTGCCCTACCTA pLKO_005 2973 CDS 100% 3.000 2.100 N Usp38 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_027554.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09209 pDONR223 100% 87.5% 90.1% None (many diffs) n/a
2 ccsbBroad304_09209 pLX_304 0% 87.5% 90.1% V5 (many diffs) n/a
3 TRCN0000474563 AGACACGTTATGTGACCCGCTCCC pLX_317 13.7% 87.5% 90.1% V5 (many diffs) n/a
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