Transcript: Mouse NM_028007.3

Mus musculus integrin alpha FG-GAP repeat containing 1 (Itfg1), mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Itfg1 (71927)
Length:
3355
CDS:
212..2044

Additional Resources:

NCBI RefSeq record:
NM_028007.3
NBCI Gene record:
Itfg1 (71927)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_028007.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000313508 GTGTGGTCCCTGGTGATTATG pLKO_005 513 CDS 100% 13.200 18.480 N Itfg1 n/a
2 TRCN0000123912 GCAGATGCTTACTTTGTTAAA pLKO.1 1508 CDS 100% 13.200 10.560 N Itfg1 n/a
3 TRCN0000317265 GCAGATGCTTACTTTGTTAAA pLKO_005 1508 CDS 100% 13.200 10.560 N Itfg1 n/a
4 TRCN0000123913 CCTGAAGACTTTGAGTGCGTT pLKO.1 484 CDS 100% 2.640 2.112 N Itfg1 n/a
5 TRCN0000313507 CCCAGATGCTCTGGCTATATT pLKO_005 1237 CDS 100% 15.000 10.500 N Itfg1 n/a
6 TRCN0000313439 TATGGCCTGAATATCTCATAA pLKO_005 2185 3UTR 100% 13.200 9.240 N Itfg1 n/a
7 TRCN0000123911 CCCTCATTGGAGTCTGCATTT pLKO.1 1923 CDS 100% 10.800 7.560 N Itfg1 n/a
8 TRCN0000123910 CCACTGATTATGGACTTCAAT pLKO.1 680 CDS 100% 5.625 3.938 N Itfg1 n/a
9 TRCN0000317264 CCACTGATTATGGACTTCAAT pLKO_005 680 CDS 100% 5.625 3.938 N Itfg1 n/a
10 TRCN0000156516 GCTGCGGGAAAGAAATGACTT pLKO.1 406 CDS 100% 4.950 3.465 N ITFG1 n/a
11 TRCN0000343699 GCTGCGGGAAAGAAATGACTT pLKO_005 406 CDS 100% 4.950 3.465 N ITFG1 n/a
12 TRCN0000123909 CTGAAATAAATATGGCCTGAA pLKO.1 2175 3UTR 100% 4.050 2.835 N Itfg1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_028007.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.