Transcript: Mouse NM_028810.2

Mus musculus Rho family GTPase 3 (Rnd3), mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Rnd3 (74194)
Length:
2827
CDS:
238..972

Additional Resources:

NCBI RefSeq record:
NM_028810.2
NBCI Gene record:
Rnd3 (74194)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_028810.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000330303 ATCCTAATCAGAACGTGAAAT pLKO_005 287 CDS 100% 13.200 18.480 N RND3 n/a
2 TRCN0000304277 ATTACGTCCCTACGGTGTTTG pLKO_005 389 CDS 100% 10.800 15.120 N Rnd3 n/a
3 TRCN0000047716 GATCCTAATCAGAACGTGAAA pLKO.1 286 CDS 100% 4.950 6.930 N RND3 n/a
4 TRCN0000304315 ACCGGAAAGATGGAGTCAAAT pLKO_005 1062 3UTR 100% 13.200 9.240 N Rnd3 n/a
5 TRCN0000077329 GCGTGTGTAAATAAGACAAAT pLKO.1 823 CDS 100% 13.200 9.240 N Rnd3 n/a
6 TRCN0000348940 GTGAGGCTTCGCCGTCTATAA pLKO_005 969 CDS 100% 13.200 9.240 N Rnd3 n/a
7 TRCN0000077332 CAGAACGTGAAATGCAAGATA pLKO.1 295 CDS 100% 5.625 3.938 N Rnd3 n/a
8 TRCN0000301364 CAGAACGTGAAATGCAAGATA pLKO_005 295 CDS 100% 5.625 3.938 N Rnd3 n/a
9 TRCN0000047715 CGACACACAAAGAATAGAGTT pLKO.1 435 CDS 100% 4.950 3.465 N RND3 n/a
10 TRCN0000077330 GCACATTAGTGGAACTCTCAA pLKO.1 668 CDS 100% 4.950 3.465 N Rnd3 n/a
11 TRCN0000331730 GCACATTAGTGGAACTCTCAA pLKO_005 668 CDS 100% 4.950 3.465 N Rnd3 n/a
12 TRCN0000077331 CTTACATAGAATGCTCAGCTT pLKO.1 755 CDS 100% 2.640 1.848 N Rnd3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_028810.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00102 pDONR223 100% 93% 100% None (many diffs) n/a
2 ccsbBroad304_00102 pLX_304 0% 93% 100% V5 (many diffs) n/a
3 TRCN0000468061 AGATCTGAGCACTTGCCCAGGTAG pLX_317 61.7% 93% 100% V5 (many diffs) n/a
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