Transcript: Mouse NM_029891.2

Mus musculus NF-kappaB repressing factor (Nkrf), mRNA.

Source:
NCBI, updated 2017-05-14
Taxon:
Mus musculus (mouse)
Gene:
Nkrf (77286)
Length:
3279
CDS:
181..2253

Additional Resources:

NCBI RefSeq record:
NM_029891.2
NBCI Gene record:
Nkrf (77286)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_029891.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000123966 CGGAAGGAAGACCTACTAGAT pLKO.1 2173 CDS 100% 4.950 6.930 N Nkrf n/a
2 TRCN0000123967 CGACGGAAATTCAAGCACATA pLKO.1 1030 CDS 100% 4.950 3.960 N Nkrf n/a
3 TRCN0000123968 CGGAAGCAAATCCATCAGATT pLKO.1 2077 CDS 100% 4.950 3.960 N Nkrf n/a
4 TRCN0000123964 CCCTGTGATTTCCAGGATATT pLKO.1 2805 3UTR 100% 13.200 9.240 N Nkrf n/a
5 TRCN0000123965 CGGTTGAATATGTCTATGAAA pLKO.1 1574 CDS 100% 5.625 3.938 N Nkrf n/a
6 TRCN0000016429 GCTTGTGAAGTTAGATGCCAA pLKO.1 901 CDS 100% 2.640 1.848 N NKRF n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_029891.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03682 pDONR223 100% 91.1% 94.7% None (many diffs) n/a
2 ccsbBroad304_03682 pLX_304 0% 91.1% 94.7% V5 (many diffs) n/a
3 TRCN0000479332 AGTCTTGGGTAAGCCTTCCTAAAA pLX_317 19.7% 91.1% 94.7% V5 (many diffs) n/a
Download CSV