Transcript: Mouse NM_030238.2

Mus musculus dynein cytoplasmic 1 heavy chain 1 (Dync1h1), mRNA.

Source:
NCBI, updated 2017-05-20
Taxon:
Mus musculus (mouse)
Gene:
Dync1h1 (13424)
Length:
14398
CDS:
211..14145

Additional Resources:

NCBI RefSeq record:
NM_030238.2
NBCI Gene record:
Dync1h1 (13424)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_030238.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000091641 CCTAACATAGACAAAGAGAAA pLKO.1 8779 CDS 100% 4.950 3.465 N Dync1h1 n/a
2 TRCN0000302329 CCTAACATAGACAAAGAGAAA pLKO_005 8779 CDS 100% 4.950 3.465 N Dync1h1 n/a
3 TRCN0000091638 GAAGGGTTGATGGACTGGAAA pLKO.1 14223 3UTR 100% 4.950 3.465 N Dync1h1 n/a
4 TRCN0000331820 GAAGGGTTGATGGACTGGAAA pLKO_005 14223 3UTR 100% 4.950 3.465 N Dync1h1 n/a
5 TRCN0000091640 GCATCATCTTAAATGAGGATA pLKO.1 5192 CDS 100% 4.950 3.465 N Dync1h1 n/a
6 TRCN0000302330 GCATCATCTTAAATGAGGATA pLKO_005 5192 CDS 100% 4.950 3.465 N Dync1h1 n/a
7 TRCN0000091639 GCACTGTATCAAGTCGGCAAA pLKO.1 9505 CDS 100% 4.050 2.835 N Dync1h1 n/a
8 TRCN0000302395 GCACTGTATCAAGTCGGCAAA pLKO_005 9505 CDS 100% 4.050 2.835 N Dync1h1 n/a
9 TRCN0000091642 CCGTGGACTTTGAAATTGCTA pLKO.1 14066 CDS 100% 3.000 2.100 N Dync1h1 n/a
10 TRCN0000302397 CCGTGGACTTTGAAATTGCTA pLKO_005 14066 CDS 100% 3.000 2.100 N Dync1h1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_030238.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10786 pDONR223 100% 3.6% 3.6% None (many diffs) n/a
2 ccsbBroad304_10786 pLX_304 0% 3.6% 3.6% V5 (many diffs) n/a
3 TRCN0000465421 TATATAACATACCCTTTCGAAGCT pLX_317 23.2% 3.6% 3.6% V5 (many diffs) n/a
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