Transcript: Human NM_030901.1

Homo sapiens olfactory receptor family 7 subfamily A member 17 (OR7A17), mRNA.

Source:
NCBI, updated 2019-09-24
Taxon:
Homo sapiens (human)
Gene:
OR7A17 (26333)
Length:
930
CDS:
1..930

Additional Resources:

NCBI RefSeq record:
NM_030901.1
NBCI Gene record:
OR7A17 (26333)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_030901.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000009436 GCCTAGGTGTGTACCTTACTT pLKO.1 764 CDS 100% 5.625 7.875 N OR7A17 n/a
2 TRCN0000367852 CAATCCCAAAGATGCTCATTA pLKO_005 230 CDS 100% 13.200 9.240 N OR7A17 n/a
3 TRCN0000011792 ACAATCCCAAAGATGCTCATT pLKO.1 229 CDS 100% 4.950 3.465 N OR7A17 n/a
4 TRCN0000009437 CATCTCCACTACAATCCCAAA pLKO.1 219 CDS 100% 4.050 2.835 N OR7A17 n/a
5 TRCN0000009435 CCCTGAATTCCTTGTCACAAA pLKO.1 458 CDS 100% 0.000 0.000 N OR7A17 n/a
6 TRCN0000357869 TTCTGGCATCCTGGATGATTG pLKO_005 434 CDS 100% 10.800 6.480 N OR7A17 n/a
7 TRCN0000357868 ACAAAGCTTAATGGTATTGTG pLKO_005 474 CDS 100% 4.950 2.970 N OR7A17 n/a
8 TRCN0000357871 GTCATCCTCTGCACTACACAG pLKO_005 380 CDS 100% 4.050 2.430 N OR7A17 n/a
9 TRCN0000009438 AGTTTCCTCCATACGTGCAAT pLKO.1 663 CDS 100% 4.950 2.475 Y OR7A17 n/a
10 TRCN0000197365 CCTCCATACGTGCAATCTCAT pLKO.1 668 CDS 100% 4.950 2.475 Y OR7A10 n/a
11 TRCN0000186114 CCATACGTGCAATCTCATCAT pLKO.1 671 CDS 100% 4.950 2.475 Y Olfr19 n/a
12 TRCN0000185906 GACACCTTTCTTAATGACATA pLKO.1 571 CDS 100% 4.950 2.475 Y OR7A10 n/a
13 TRCN0000009348 CCCATGTACTTCTTCCTCTCA pLKO.1 172 CDS 100% 2.640 1.320 Y OR2A4 n/a
14 TRCN0000189182 CCCATGTACTTCTTCCTCTCT pLKO.1 172 CDS 100% 2.640 1.320 Y Olfr444 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_030901.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02957 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_02957 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000467319 CACTAATCTAATCTTCGCCGCAAA pLX_317 32.8% 100% 100% V5 n/a
4 ccsbBroadEn_08034 pDONR223 100% 84.1% 77.4% None (many diffs) n/a
5 ccsbBroad304_08034 pLX_304 0% 84.1% 77.4% V5 (many diffs) n/a
6 TRCN0000476174 CTCAACAGGGGAATCCGTTACGGA pLX_317 33.4% 84.1% 77.4% V5 (many diffs) n/a
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