Transcript: Human NM_032332.4

Homo sapiens WD repeat domain 83 (WDR83), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-28
Taxon:
Homo sapiens (human)
Gene:
WDR83 (84292)
Length:
1146
CDS:
39..986

Additional Resources:

NCBI RefSeq record:
NM_032332.4
NBCI Gene record:
WDR83 (84292)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_032332.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000196497 GTGAACACGGTGCAGTTTAAT pLKO.1 372 CDS 100% 15.000 21.000 N WDR83 n/a
2 TRCN0000244271 GTGCGAGCCGTACGATTTAAT pLKO_005 120 CDS 100% 15.000 21.000 N WDR83 n/a
3 TRCN0000244446 GTTATCCTGTCCGGCTCTATT pLKO_005 405 CDS 100% 13.200 18.480 N WDR83 n/a
4 TRCN0000244448 TGAACACGGTGCAGTTTAATG pLKO_005 373 CDS 100% 13.200 18.480 N WDR83 n/a
5 TRCN0000074497 GATTTAATGTGGATGGCAATT pLKO.1 133 CDS 100% 10.800 15.120 N WDR83 n/a
6 TRCN0000074494 CGATTTAATGTGGATGGCAAT pLKO.1 132 CDS 100% 4.050 5.670 N WDR83 n/a
7 TRCN0000074496 GAGACGCTATGACCTAAGGAT pLKO.1 563 CDS 100% 3.000 4.200 N WDR83 n/a
8 TRCN0000195349 CGAGTACAAGGGCCATAAGAA pLKO.1 719 CDS 100% 5.625 3.938 N WDR83 n/a
9 TRCN0000244447 GCGAGTACAAGGGCCATAAGA pLKO_005 718 CDS 100% 5.625 3.938 N WDR83 n/a
10 TRCN0000074495 AGTTATCCTGTCCGGCTCTAT pLKO.1 404 CDS 100% 4.950 3.465 N WDR83 n/a
11 TRCN0000074493 CGGCTCTATTGATTCCAGTAT pLKO.1 416 CDS 100% 4.950 3.465 N WDR83 n/a
12 TRCN0000244449 GCGTGAGACGCTATGACCTAA pLKO_005 559 CDS 100% 4.950 3.465 N WDR83 n/a
13 TRCN0000199761 GCAGCTCTTCTCAGACTACGT pLKO.1 587 CDS 100% 2.640 1.848 N WDR83 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_032332.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04361 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_04361 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000471440 AGCTGACAGACCGTGTCGAGTCTT pLX_317 41.2% 100% 100% V5 n/a
Download CSV