Transcript: Human NM_032812.9

Homo sapiens plexin domain containing 2 (PLXDC2), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-05-02
Taxon:
Homo sapiens (human)
Gene:
PLXDC2 (84898)
Length:
12275
CDS:
649..2238

Additional Resources:

NCBI RefSeq record:
NM_032812.9
NBCI Gene record:
PLXDC2 (84898)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_032812.9, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000412411 GTACATCTCCAGGATAATTAT pLKO_005 1342 CDS 100% 15.000 21.000 N PLXDC2 n/a
2 TRCN0000060392 CCACCGAGTAGAGCTACAAAT pLKO.1 1560 CDS 100% 13.200 18.480 N PLXDC2 n/a
3 TRCN0000444484 GTCGGACTGTCCGATGCATTT pLKO_005 1480 CDS 100% 10.800 15.120 N PLXDC2 n/a
4 TRCN0000060389 CCAAGATAGCACTACATCTAA pLKO.1 1928 CDS 100% 5.625 7.875 N PLXDC2 n/a
5 TRCN0000060390 CGAATCATCTTTGGATACAAA pLKO.1 1408 CDS 100% 5.625 7.875 N PLXDC2 n/a
6 TRCN0000424193 AGTGAATCTGTCCTTCGATTT pLKO_005 1122 CDS 100% 10.800 8.640 N PLXDC2 n/a
7 TRCN0000215629 GTTCGAAGAAGAACAATTTAT pLKO.1 1534 CDS 100% 15.000 10.500 N Plxdc2 n/a
8 TRCN0000427746 GTTCGAAGAAGAACAATTTAT pLKO_005 1534 CDS 100% 15.000 10.500 N PLXDC2 n/a
9 TRCN0000060388 GCAGGACAATAACACTCAGAT pLKO.1 948 CDS 100% 4.950 3.465 N PLXDC2 n/a
10 TRCN0000060391 GCCATTCTTGTGACAGTCTAT pLKO.1 2056 CDS 100% 4.950 3.465 N PLXDC2 n/a
11 TRCN0000162548 CACACACACACACACAAATAT pLKO.1 6757 3UTR 100% 15.000 7.500 Y KAAG1 n/a
12 TRCN0000204533 CCTCCCAAAGTGCTGGAATTA pLKO.1 9397 3UTR 100% 13.200 6.600 Y LRRC74B n/a
13 TRCN0000166364 CACACACACACACACACACAA pLKO.1 6753 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_032812.9, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12876 pDONR223 100% 90.7% 90.7% None 325_471del n/a
2 ccsbBroad304_12876 pLX_304 0% 90.7% 90.7% V5 325_471del n/a
3 TRCN0000481191 TTGCGCTGCGACAGTTGATCTCAC pLX_317 33% 90.7% 90.7% V5 325_471del n/a
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