Transcript: Human NM_144582.3

Homo sapiens testis expressed 261 (TEX261), mRNA.

Source:
NCBI, updated 2019-08-30
Taxon:
Homo sapiens (human)
Gene:
TEX261 (113419)
Length:
3365
CDS:
117..707

Additional Resources:

NCBI RefSeq record:
NM_144582.3
NBCI Gene record:
TEX261 (113419)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_144582.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000136090 GAGATGATGTCGTCTCCAATT pLKO.1 589 CDS 100% 10.800 15.120 N TEX261 n/a
2 TRCN0000138348 CCTAACTTCATCCTGTCGTGT pLKO.1 399 CDS 100% 2.640 3.696 N TEX261 n/a
3 TRCN0000137737 GCCCTTCATTTCCTTGGCTTT pLKO.1 1979 3UTR 100% 4.050 3.240 N TEX261 n/a
4 TRCN0000134916 CGTCTCCAATTATTTCACCAA pLKO.1 599 CDS 100% 2.640 2.112 N TEX261 n/a
5 TRCN0000135609 GTGGATAATTCCGTTTGCGTT pLKO.1 515 CDS 100% 2.640 2.112 N TEX261 n/a
6 TRCN0000137768 GCAGCATTTGACATGGCTGAT pLKO.1 2308 3UTR 100% 4.050 2.835 N TEX261 n/a
7 TRCN0000135432 GTGGTGGTGAATCATTACCTA pLKO.1 426 CDS 100% 3.000 2.100 N TEX261 n/a
8 TRCN0000138483 CTGCCTGTGGATAATTCCGTT pLKO.1 509 CDS 100% 2.640 1.848 N TEX261 n/a
9 TRCN0000135163 CCTATTTCACTTTCTGCCTGT pLKO.1 496 CDS 100% 2.160 1.296 N TEX261 n/a
10 TRCN0000138246 CTCCTTCATCAAAGAGGCCAT pLKO.1 659 CDS 100% 2.160 1.296 N TEX261 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_144582.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04648 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_04648 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000474769 TCAGACAAGATAACATCGCTGGAC pLX_317 75.1% 100% 100% V5 n/a
4 ccsbBroadEn_14352 pDONR223 100% 75.8% 75.5% None 1_141del;578A>C n/a
5 ccsbBroad304_14352 pLX_304 0% 75.8% 75.5% V5 1_141del;578A>C n/a
6 TRCN0000478474 AGCATCACGACGAATGGGCCACTC pLX_317 74.7% 75.8% 75.5% V5 1_141del;578A>C n/a
Download CSV